| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,706,274 – 3,706,374 |
| Length | 100 |
| Max. P | 0.638744 |
| Location | 3,706,274 – 3,706,374 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 84.23 |
| Mean single sequence MFE | -22.01 |
| Consensus MFE | -17.11 |
| Energy contribution | -16.89 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3706274 100 + 27905053 UAUUAUAUGCACUUAAUCCCGGCCAAUUGGCAGCGACUUCCUGUUCGCUUGCCAAAAGACC-AAGCUAACACAUUACUUAUAAGCAAAUAAGGUCAG-AUGA ...............(((..((((..(((((((((((.....).)))).))))))......-..(((...............)))......)))).)-)).. ( -21.56) >DroPse_CAF1 67178 100 + 1 CUUCACAUCCA--CACUGCCAGCCAAUUGGCAAUGGAUUCUCUUGUGUUUGCCAAGACCCGAAAGCUAACACAUUACUUAUAAGCAAAUAAGGUCAGAAUGA .......((((--...((((((....)))))).))))((((..((((((.((............)).))))))...(((((......)))))...))))... ( -19.90) >DroSec_CAF1 64145 100 + 1 UUUGAUAUGCACUUAUUCCCGGCCAAUUGGCAGCGACUUCCUUUUCGCUUGCCAAAAGCCC-AAGCUAACACAUUACUUAUAAGCAAAUAAGGUCAG-AUGA ((((((..............(((...((((((((((........)))).))))))..))).-..............(((((......))))))))))-)... ( -23.90) >DroEre_CAF1 65829 100 + 1 UUUUAUAUGCAUUUAUCCCCGGCCAAUUGGCAGCGACUUCCUGUUCGCUUGCCAAAAUCCA-AAGCUAACACAUUACUUAUAAGCAAAUAAGGUCAG-AUGA ............(((((...((((..(((((((((((.....).)))).))))))......-..(((...............)))......)))).)-)))) ( -22.06) >DroYak_CAF1 62388 100 + 1 UUUUAUAUGCAUUUAUUCCCGGCCAAUUGGCAGCGACUUCCUCUUCGCUUGCCAAAAACCA-AAGCUAACACAUUACUUAUAAGCAAAUAAGGUCAG-AUGA ....................((((..((((((((((........)))).))))))......-..(((...............)))......))))..-.... ( -21.06) >DroPer_CAF1 72617 100 + 1 CUGCACAUCCA--UACUGCCAGCCAAUUGGCAAUGGAUUCUCUUGUGUUUGCCAAGACCCGAAAGCUAACACAUUACUUAUAAGCAAAUAAGGUCAGAAUGA (((.(((((((--(..((((((....)))))))))))).....((((((.((............)).))))))...(((((......))))))))))..... ( -23.60) >consensus UUUUAUAUGCA_UUAUUCCCGGCCAAUUGGCAGCGACUUCCUUUUCGCUUGCCAAAACCCA_AAGCUAACACAUUACUUAUAAGCAAAUAAGGUCAG_AUGA ....................((((..((((((((((........)))).)))))).........(((...............)))......))))....... (-17.11 = -16.89 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:09 2006