| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,706,143 – 3,706,243 |
| Length | 100 |
| Max. P | 0.611273 |
| Location | 3,706,143 – 3,706,243 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 90.55 |
| Mean single sequence MFE | -18.07 |
| Consensus MFE | -14.19 |
| Energy contribution | -13.25 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.611273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3706143 100 - 27905053 AAAUGCG-ACUGUAUGUUGGAAUAUUCAACAUGUUUUAACAAAGUUGAAGUAAAUAUUUACAUGGCCAUAACUCACCAAUAUUUCGACAACUCAUCGUAGC ...((((-(.((..((((((((((((((((.(((....)))..))))))((((....)))).(((..........))).))))))))))...))))))).. ( -21.00) >DroSec_CAF1 64011 101 - 1 AAAUGCGAACUGUAUGUUGAAAUAUUCAACAUGUUUUAAUAAAGUUUAAGUAAAUAUUUACUUGGCCAUAAUUCACCAAUAUUUCGACAACUCAUCGUAGC ...(((((...((.((((((((((((.....(((....)))..(..(((((((....)))))))..)..........))))))))))))))...))))).. ( -19.30) >DroSim_CAF1 67125 100 - 1 AAAUGCG-ACUGUAUGUUGAAAUAUUCAACAUGUUUUAACAAAGUUUAAGUAAAUAUUUACAUGGCCAUAAUUCACCAAUAUUUCGACAACUCAUCGUAGC ...((((-(.((..(((((((((((........................((((....)))).(((..........))))))))))))))...))))))).. ( -17.60) >DroEre_CAF1 65698 100 - 1 AAAUGCU-GCUGUAUGCUCGAAUAUUCAACAUGUUUUAACAAAGUUUAAAUAAAUAAUUCAAUGGCCAUAAAUCCCCAAUAUUUCGGCAACUCAAGGUAGC ....(((-(((...((((.((((((......(((((.(((...))).)))))..........(((..........))))))))).))))......)))))) ( -14.40) >consensus AAAUGCG_ACUGUAUGUUGAAAUAUUCAACAUGUUUUAACAAAGUUUAAGUAAAUAUUUACAUGGCCAUAAUUCACCAAUAUUUCGACAACUCAUCGUAGC ...((((....((.(((((((((((......(((....))).....................(((..........))))))))))))))))....)))).. (-14.19 = -13.25 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:08 2006