Locus 1224

Sequence ID 3R_DroMel_CAF1
Location 3,698,928 – 3,699,025
Length 97
Max. P 0.536830
window2002

overview

Window 2

Location 3,698,928 – 3,699,025
Length 97
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 85.44
Mean single sequence MFE -30.65
Consensus MFE -22.80
Energy contribution -23.78
Covariance contribution 0.97
Combinations/Pair 1.14
Mean z-score -2.13
Structure conservation index 0.74
SVM decision value 0.01
SVM RNA-class probability 0.536830
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3698928 97 + 27905053
AAACAACAACUGGUUAAGACAGCUGCAGCGACUGUCCUGACCGACAGGACAGACAGCUUUUCCAGGACAUUCUCGUGAAGCAGCCAAGUCACUCGAU---
.................(((.((((((((..((((((((.....))))))))...)))....((.((.....)).))..)))))...))).......--- ( -29.60)
>DroSec_CAF1 57012 97 + 1
AAACAACAACUGGCUAAGACAGCUGCAGCGACUGUCCUGGCCGAAAGGAUAGACAGCUUUUCCAGGACAUUCUCGUGGAGCAGCCAAGUCACUCGAU---
.................(((.(((((.((((.((((((((((....)).............))))))))...))))...)))))...))).......--- ( -30.91)
>DroSim_CAF1 59468 97 + 1
AAACAACAACUGGCUAAGACAGUUGCAGCGACUGUCCUGGCCGAAAGGACAGACGGCUUUGCCAGGACAUUCUCGUGGAGCAGCCAAGUCACUCGAU---
......((((((.......)))))).((.(((((((.((.((....)).)))))((((...(((.((.....)).)))...)))).)))).))....--- ( -33.60)
>DroEre_CAF1 57051 97 + 1
AAGCACAAACUGGCUAAGACAGCUGCAGCGAUUGUCCUGGCCGAAAGGACAGACAGCUUUUCCAGGACAUUCUCGUGGAGCGGGCACGUCACUCGCU---
..(((....(((.......))).)))(((((.((((((.......))))))(((.(((((((((.((.....)).))))).))))..)))..)))))--- ( -31.30)
>DroYak_CAF1 55061 97 + 1
AAACACAAACUGGCUAAGACAGCUGCAGCGACUGUCCUGACCGACAGGACAGACAGCUUUUCCAGGACAUUCUCGUGGAGCAGCCAAGUCACUCGAU---
.................(((.((((((((..((((((((.....))))))))...)))..((((.((.....)).)))))))))...))).......--- ( -34.40)
>DroAna_CAF1 42097 90 + 1
AC--ACAAACCAGCUAAGACAGCUGCAGCGACAGUCCUGGCCAA-----CAGACAGUU---UCAGGACAUUCUCGUGGAACAGCCAUGCCAGUCAAUAUU
..--......(((((.....)))))....(((.(((((((..((-----(.....)))---))))))).....(((((.....)))))...)))...... ( -24.10)
>consensus
AAACAAAAACUGGCUAAGACAGCUGCAGCGACUGUCCUGGCCGAAAGGACAGACAGCUUUUCCAGGACAUUCUCGUGGAGCAGCCAAGUCACUCGAU___
.................(((.(((((.((((.((((((((((....)).............))))))))...))))...)))))...))).......... (-22.80 = -23.78 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:03 2006