| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,657,111 – 3,657,208 |
| Length | 97 |
| Max. P | 0.618273 |
| Location | 3,657,111 – 3,657,208 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 96.05 |
| Mean single sequence MFE | -27.12 |
| Consensus MFE | -22.85 |
| Energy contribution | -23.10 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3657111 97 - 27905053 AAAACCAAAAACGUUUCCGUCCCAGAAAGGGCGGAGGUCCAAAUCCAACUGCCCGGCAACAGCUCCGGCGAUUAUCUGCCGGACUUUGCACAAAAUU ...........((..(((((((......)))))))((.......)).......))((((.((.(((((((......)))))))))))))........ ( -29.80) >DroSec_CAF1 15869 97 - 1 AAAACCGAAAACGUUUCCGACCCAGAAAGGGCGGAGGUCCAGAUCCAACUGCCCGGCAACAGCUCCGGCGAUUAUCUGCCGGACUUUCCACAAAAUU ...............((((.(((.....)))))))((..(((......))).))((.((.((.(((((((......)))))))))))))........ ( -27.60) >DroSim_CAF1 18104 97 - 1 AAAACCGAAAACGUUUCCGACCCAGAAAGGGCGGAGGUCCAGAUCCAACUGCCCGGCAACAGCUCAAGCGAUUAUCUGCCGGACUUUCCACAAAAUU ......((((...((((((.(((.....)))))))))..(((......))).((((((...((....)).......))))))..))))......... ( -24.20) >DroEre_CAF1 15244 97 - 1 AAAACCGAAAACGUUUCCGUCCCAGAAAGGGCGGAUGUCCAAAUCCAACUGCCCGGCAACAGCUCCGGCGAUUAUCUGCCGGACUUUCCACAAAAUU ......((((..(((.((((((......))))((((......))))........)).)))...(((((((......))))))).))))......... ( -26.90) >consensus AAAACCGAAAACGUUUCCGACCCAGAAAGGGCGGAGGUCCAAAUCCAACUGCCCGGCAACAGCUCCGGCGAUUAUCUGCCGGACUUUCCACAAAAUU ...............((((.(((.....))))))).((((..........((..(....).))...((((......))))))))............. (-22.85 = -23.10 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:46 2006