Locus 1211

Sequence ID 3R_DroMel_CAF1
Location 3,651,858 – 3,651,967
Length 109
Max. P 0.583543
window1978

overview

Window 8

Location 3,651,858 – 3,651,967
Length 109
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 94.65
Mean single sequence MFE -26.38
Consensus MFE -23.20
Energy contribution -22.95
Covariance contribution -0.25
Combinations/Pair 1.12
Mean z-score -1.54
Structure conservation index 0.88
SVM decision value 0.10
SVM RNA-class probability 0.583543
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3651858 109 + 27905053
UUUGUUCAAGUCAGUCCCAGCUGACGUGGAUGUGUAAUUUUCAUGGCAUUCACACACAAGAAAGUUAUGCCAGCGUCAUCAGUUUUUCUAAACUUUAAUGAGAAACUUC
...(((((.((((((....)))))).)))))(((((((((((.((...........)).)))))))))))..........((((((((...........)))))))).. ( -26.80)
>DroSec_CAF1 10583 109 + 1
UUUGUUCAAGUCAGUCCCAGCUGACGUGGAUGUGUAAUUUUCAUGGCAUUCACACACAAGAAAGUUAUGUCAGCGUCAUCAGUUCUUCUAAACUUUAAUGGGAAAUUUC
..............((((((.((((((.(((..(((((((((.((...........)).)))))))))))).)))))).)((((......))))....)))))...... ( -25.40)
>DroSim_CAF1 12808 109 + 1
UUUGUUCAAGUCAGUCCCAGCUGACGUGGAUGUGUAAUUUUCAUGGCAUUCACACACAAGAAAGUUAUGCCAGCGUCAUCAGUUCUUCUAAACUUUAAUGGGAAAUUUC
..............((((((.((((((....(((((((((((.((...........)).)))))))))))..)))))).)((((......))))....)))))...... ( -26.10)
>DroEre_CAF1 10146 109 + 1
UUUGUUCGAGUCAGUCCCAGUUGACGUGGAUGUGUAAUUUUCAUCGCAUUCACACACAAGAAAGUUAUACUAGCGUCAUCAGUUGUUCUAAACUUGUAUGGGAAAUUUC
.......(((....((((((.((((((....(((((((((((.................)))))))))))..)))))).)((((......))))....)))))...))) ( -27.23)
>consensus
UUUGUUCAAGUCAGUCCCAGCUGACGUGGAUGUGUAAUUUUCAUGGCAUUCACACACAAGAAAGUUAUGCCAGCGUCAUCAGUUCUUCUAAACUUUAAUGGGAAAUUUC
.......((((...((((((.((((((....(((((((((((.((...........)).)))))))))))..)))))).)((((......))))....))))).)))). (-23.20 = -22.95 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:41 2006