| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,649,523 – 3,649,636 |
| Length | 113 |
| Max. P | 0.729899 |
| Location | 3,649,523 – 3,649,636 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 70.39 |
| Mean single sequence MFE | -19.68 |
| Consensus MFE | -14.09 |
| Energy contribution | -13.95 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.729899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3649523 113 - 27905053 CCCUAAUUCUUCGACAAACACAGCAAACACACCUGGACGCAGGACACUGAAUACUGAGUACGGAAAGGACACCCAAAUGGCAAUGUGCUCAUUGUCCACUGCAAACAUUACAU ......................(((.......(((.((.(((...........))).)).)))...(((((.....(((((.....)).))))))))..)))........... ( -18.50) >DroPse_CAF1 11367 86 - 1 GUCUAAU-CU------------GCUCCGACACCUGGCCACAGGACAC--------------GAAGAGGACAACGACAUGGCAAUGUGCUCAUUGUCCAACGGUUACAUUACAA .......-..------------...(((...((((....))))....--------------.....((((((.(((((......))).)).))))))..)))........... ( -20.60) >DroSec_CAF1 8269 106 - 1 CCCUAAUUCUUCUACAAACACGACAAACACACCUGGAUGCAGGACACUGAAUACUGAAUACCAAAAGGACACCCAAAUGGCAAUGUGCUCAUUGUCCACUGCCA------CA- .................................(((.....(((((.(((.(((......(((...((....))...)))....))).))).)))))....)))------..- ( -17.10) >DroSim_CAF1 10445 113 - 1 CCCUAAUUCUUCGACAAACACAGCAAACACACCUGGACGCAGGACACUGAAUACUGAAUACCGAAAGGACACCCAAAUGGCAAUGUGCUCAUUGUUCACUGCAAACAUUACAU ......................(((......((((....))))....((((((.(((...((....)).(((((....))....))).))).)))))).)))........... ( -20.20) >DroEre_CAF1 7948 99 - 1 --------------CAAACACAGCAAACACACCUGGACGCAGGACACUGAAUACUGAAUACCGAAAGGACACCCAAAUGGCAAGGUGCUCAUUGUCCACGGCAAACAUUACAU --------------......(((.........)))...((.(((((.(((.((((.....((....))....((....))...)))).))).)))))...))........... ( -21.10) >DroPer_CAF1 17610 86 - 1 GUCUAAU-CU------------GCUCCGACACCUGGCCACAGGACAC--------------GAAGAGGACAACGACAUGGCAAUGUGCUCAUUGUCCAACGGUUACAUUACAA .......-..------------...(((...((((....))))....--------------.....((((((.(((((......))).)).))))))..)))........... ( -20.60) >consensus CCCUAAU_CU____CAAACACAGCAAACACACCUGGACGCAGGACACUGAAUACUGAAUACCAAAAGGACACCCAAAUGGCAAUGUGCUCAUUGUCCACUGCAAACAUUACAU ...............................((((....)))).......................(((((.....(((((.....)).))))))))................ (-14.09 = -13.95 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:40 2006