Locus 1203

Sequence ID 3R_DroMel_CAF1
Location 3,629,030 – 3,629,135
Length 105
Max. P 0.500000
window1969

overview

Window 9

Location 3,629,030 – 3,629,135
Length 105
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 81.08
Mean single sequence MFE -27.77
Consensus MFE -18.86
Energy contribution -18.40
Covariance contribution -0.46
Combinations/Pair 1.39
Mean z-score -1.26
Structure conservation index 0.68
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3629030 105 + 27905053
UUCCGUUUGGGAAUUCACGGGGGGUGCAACAGUGGCCACGAAAAUGGGUACUUUGAUUGGGGCAUUCAAGGAGUUGAAUGUCUCAAUGUAAUAACUGAUUUGUAU
((((.....))))....(((..(.(((...((((.(((......))).))))...((((((((((((((....))))))))))))))))).)..)))........ ( -30.30)
>DroPse_CAF1 2979 104 + 1
UUCAACGAUAGAAAUAGCAGGUGGUGCUGAAGUUCCCACACAAAUUGGCAGCCUUAGAGGAGGUUUCAUGUGGCUUAGAGUCUCGAUAUAAUAACUGACUUGUG-
..........(((.(((((.....)))))...)))(((((.....(((.((((((....))))))))))))))....(((((..............)))))...- ( -19.44)
>DroSec_CAF1 3145 105 + 1
UUCCGUUUGGCAAUUCACGGGGGGUGCAACAGUGGCCACGAAAAUGGGCACUUUGAUUGGGGCAUUCAAGAAGUUGAAUGUCUCAAUGUAAUAACUGAUUUGUAU
.........((((.(((.(..(..(((...((((.(((......))).))))...((((((((((((((....))))))))))))))))).)..)))).)))).. ( -32.20)
>DroSim_CAF1 4469 105 + 1
UUCCGUAUGGGAAUUCACGGGGGGUGCAACAGUGGCAACGAAAAUGGGUACUUUGAUUGGGGCAUUCAAGAAGUUGAAUGUCUCAAUGUAAUAACUGAUUUGUAU
((((.....))))....((((((((((..((.((....))....)).))))))).((((((((((((((....)))))))))))))).......)))........ ( -29.40)
>DroEre_CAF1 4192 105 + 1
UUCCAAAGAAGAAUUUACGGGGGGUGCAGCAGUGGCCACGAAAAUGGGCAGCUUGAUUGGGGCAUUCGGGAAGUUGAAUGUCUCAAUGUAAUAACUGAUUUGUAU
...((((..((...((((..(((.(((..((.((....))....)).))).))).((((((((((((((....))))))))))))))))))...))..))))... ( -28.00)
>DroYak_CAF1 3880 105 + 1
UUCCAAAGAAGAAUAUACGGGGGGUGCAACAGUGGCCACGAAAAUGGGUAGUUUGAUUGGGGCAUUCAAGAAGUUGGAUGUCUCAAUAUAAUAACUGAUUUGUAU
.................((..((.(((....))).)).)).((((.(((.(((..((((((((((((((....))))))))))))))..))).))).)))).... ( -27.30)
>consensus
UUCCAUAUGAGAAUUCACGGGGGGUGCAACAGUGGCCACGAAAAUGGGCACUUUGAUUGGGGCAUUCAAGAAGUUGAAUGUCUCAAUGUAAUAACUGAUUUGUAU
................(((((.(((....(((..(((.........)))...)))((((((((((((((....))))))))))))))......)))..))))).. (-18.86 = -18.40 +  -0.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:32 2006