Locus 1201

Sequence ID 3R_DroMel_CAF1
Location 3,628,324 – 3,628,427
Length 103
Max. P 0.500000
window1966

overview

Window 6

Location 3,628,324 – 3,628,427
Length 103
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 76.31
Mean single sequence MFE -31.48
Consensus MFE -15.76
Energy contribution -15.84
Covariance contribution 0.08
Combinations/Pair 1.15
Mean z-score -1.73
Structure conservation index 0.50
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3628324 103 + 27905053
ACA-AGCAAUUUGUU-----UUCGGGGUGUUGGCUGUGUAACCCC--UUGGCCACUUUGCUGCCGCAUAACGUGGCACAAUUAGGACCUCGAAAUUA-UUUGGGC-------ACUCACU
...-.((.......(-----((((((((.(((((((.........--.)))))...(((.((((((.....)))))))))..)).)))))))))...-.....))-------....... ( -30.56)
>DroPse_CAF1 2258 117 + 1
ACAAAGUACAUUAUUGGAUGUUUUGGGUGUUGGCC-UCCAACC-CGUUCGACCACUUUGUUGCCACAUUAUGUGGCACAAUUAAGACCUCGACAUCUUUUUGGGUGGUCUGCUUUUGCU
..((((((.......(((((..(((((.(....).-)))))..-)))))(((((((....((((((.....))))))(((..((((........)))).)))))))))))))))).... ( -35.50)
>DroSec_CAF1 2453 102 + 1
ACA-AGCACUUUGUU-----UUCGGGGUGUUGGCUGUGUAACC-C--UUGGCCACUUUGUUGCCGCAUAACGUGGCACAAUUAGGACCUCGAAAUUA-UUUGGGC-------ACUCACU
...-.((.((.((.(-----((((((((.(((((((.......-.--.)))))...((((.(((((.....)))))))))..)).))))))))).))-...))))-------....... ( -31.20)
>DroSim_CAF1 3778 91 + 1
ACA-AGCACUUUG----------------UUGGCUGUGUAACC-C--UUGGCCACUUUGUUGCCGCAUAACGUGGCACAAUUAGGACCUCGAAAUUA-UUUGGGC-------ACUCACU
...-(((.(....----------------..))))(((...((-(--..((((...((((.(((((.....)))))))))...)).)).........-...))).-------...))). ( -21.94)
>DroYak_CAF1 3209 100 + 1
ACA-AGCACUUUGUU-----UUCGGGGUGUUGGCU--GUAACC-C--UUGGCCACUUUGCUGCCGCAUAACGUGGCACAAUUAGGAGCCCGAAAUUA-UUUGGGC-------ACUCACU
...-(((((((((..-----..)))))))))((((--(.....-.--.)))))...(((.((((((.....)))))))))......(((((((....-)))))))-------....... ( -34.20)
>DroPer_CAF1 2104 117 + 1
ACAAAGUACAUUAUUGGAUGUUUUGGGUGUUGGCC-UCCAACC-CGUUCGACCACUUUGUUGCCACAUUAUGUGGCACAAUUAAGACCUCGACAUCUUUUUGGGUGGUCUGCUUUUGCU
..((((((.......(((((..(((((.(....).-)))))..-)))))(((((((....((((((.....))))))(((..((((........)))).)))))))))))))))).... ( -35.50)
>consensus
ACA_AGCACUUUGUU_____UUCGGGGUGUUGGCU_UGUAACC_C__UUGGCCACUUUGUUGCCGCAUAACGUGGCACAAUUAGGACCUCGAAAUUA_UUUGGGC_______ACUCACU
..............................(((((..............)))))..(((.((((((.....))))))))).......((((((.....))))))............... (-15.76 = -15.84 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:30 2006