| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 673,551 – 673,641 |
| Length | 90 |
| Max. P | 0.633748 |
| Location | 673,551 – 673,641 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 86.81 |
| Mean single sequence MFE | -19.29 |
| Consensus MFE | -12.35 |
| Energy contribution | -12.13 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 673551 90 + 27905053 C------UCCAUCUUCAGCUCCAUCCUUAGCUCCUGCUCCAGCACCAGGUCCAGCUCCUUCCUUCUCUUCAGCGGCUCUUUGGUCGCUCAUUAGUU .------.........((((....(((..(((........)))...)))...))))..............(((((((....)))))))........ ( -15.50) >DroSec_CAF1 92926 90 + 1 CUUCAGCUCCAUCUGCAGCUCCAUCUUUACCUCCAGCUCCA------GGUCCAGCUCCUUCCUUCUCUUCAGCGGCUCUUUGGCCGCUCAUUAGUU ....((((..(((((.((((..............)))).))------)))..))))..............(((((((....)))))))........ ( -22.54) >DroSim_CAF1 90636 96 + 1 CUUCAGCUCCAUCUGCAGCUCCAUCUUUACCUCCAGCUCCAGCACCAGGCGCAGCUCCUUCCUUCUCUUCAGCGGCUCUUUGGCCGCUCAUUAGUU .....((.((..(((.((((..............)))).))).....)).))..................(((((((....)))))))........ ( -19.84) >consensus CUUCAGCUCCAUCUGCAGCUCCAUCUUUACCUCCAGCUCCAGCACCAGGUCCAGCUCCUUCCUUCUCUUCAGCGGCUCUUUGGCCGCUCAUUAGUU ................((((...............(((((.......))...)))...............(((((((....)))))))....)))) (-12.35 = -12.13 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:41 2006