Locus 1199

Sequence ID 3R_DroMel_CAF1
Location 3,612,329 – 3,612,420
Length 91
Max. P 0.748170
window1964

overview

Window 4

Location 3,612,329 – 3,612,420
Length 91
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 84.78
Mean single sequence MFE -32.81
Consensus MFE -24.49
Energy contribution -25.47
Covariance contribution 0.98
Combinations/Pair 1.17
Mean z-score -2.63
Structure conservation index 0.75
SVM decision value 0.47
SVM RNA-class probability 0.748170
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3612329 91 + 27905053
GGAUCC---UUCUGACCAGGGAUAUGGGGGAGCAGCUGGAGCAAAAGCUCCCUCUCCCUCAAUCAAAGUCAAAGCUCUUUGUUCUGGAGCCUCU
......---...((((....(((.((((((((.((..(((((....))))))))))))))))))...))))..(((((.......))))).... ( -33.80)
>DroSec_CAF1 69918 91 + 1
GGAUCC---CUCUGACCAGGGAUAUGGGGGAGCAGCUGGAGCAAAAGCUCCCUCUCCCUCAACCAAAGUCAAAGCUCUUUGUUCUGAAGCCACU
((((((---((......)))))).((((((((.((..(((((....))))))))))))))).))....(((.(((.....))).)))....... ( -34.70)
>DroSim_CAF1 63311 91 + 1
GGAUCC---CUCUGACCAGGGGUAUGGGGGAGCAGCUGGAGCAAAAGCUCCCUCUCCCUCAACCAAAGUCAAAGCUCUUUGUUCUGGAGCCACU
((((((---((......)))))).((((((((.((..(((((....))))))))))))))).)).........(((((.......))))).... ( -37.20)
>DroEre_CAF1 69496 91 + 1
GGAUCC---CUCCAACCAGGGAUAUGGGGGAGCCGCUGGAGCAGCAGCUCCCUCUCCCUCAAUCAAAGUCAAAGCUCUUUGUUCUGGAAGCACU
(((...---.)))..(((((((...((((((((.((((...)))).)))))))))))).....(((((........)))))...)))....... ( -33.80)
>DroYak_CAF1 87095 91 + 1
GGAUCC---UUCCAACCAGGGAUAUGGGGGAGCAGCUGGAGCAUAAGCUCCCUCAGCCCCAAUCAAAGUCAAACCUCUUUGUUCUGGAACCACU
((.(((---.........(((...(((((((((.((....))....)))))))))..)))...(((((........)))))....))).))... ( -31.80)
>DroAna_CAF1 60162 92 + 1
GGAACCAUCCUCUGGCCAGGGAUAAGCAGGAGCAGCUGGUGCACAAGCGCCCUCAUUCUCCAGCAAAACCAAAGCCCUUUCAUCUGGAGCCU--
((..(((......(((...((....((.((((.....(((((....)))))......)))).))....))...)))........)))..)).-- ( -25.54)
>consensus
GGAUCC___CUCUGACCAGGGAUAUGGGGGAGCAGCUGGAGCAAAAGCUCCCUCUCCCUCAAUCAAAGUCAAAGCUCUUUGUUCUGGAGCCACU
(((.......)))..((((((...((((((((.((..(((((....)))))))))))))))..(((((........)))))))))))....... (-24.49 = -25.47 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:28 2006