Locus 1198

Sequence ID 3R_DroMel_CAF1
Location 3,607,800 – 3,607,897
Length 97
Max. P 0.663430
window1963

overview

Window 3

Location 3,607,800 – 3,607,897
Length 97
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 78.05
Mean single sequence MFE -28.42
Consensus MFE -21.69
Energy contribution -21.33
Covariance contribution -0.36
Combinations/Pair 1.19
Mean z-score -1.03
Structure conservation index 0.76
SVM decision value 0.27
SVM RNA-class probability 0.663430
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3607800 97 - 27905053
-----UAUCGUAUCGAUUCAUCCAUUACAGUCCGCUGCCCACAGCGAGGGUUACCGCACCUUUUGCUGUGGUCCAUGCAAGACGGAUCCUUUAAAACUGGAG
-----...............(((((((.(((((((((((((((((((((((......))).)))))))))).....)).)).))))..)).)))...)))). ( -28.00)
>DroSim_CAF1 58843 97 - 1
-----UAUCAUAUCGAUUCUUUCAUUACAGUCCGCUGCUCACAGCGAGGGUUACCGCACCUUUUGCUGUGGUCCCUGCAAGACGGAUCCUCUGAAAUUGGAG
-----.......((((((...(((.....((((((((((((((((((((((......))).)))))))))).....)).)).)))))....))))))))).. ( -26.40)
>DroEre_CAF1 64533 94 - 1
--------CAUACCGGUUCUUUCGUCACAGUCCGCUGCCCACAGCGAGGGUUACCGCACCUUCUGCUGUGGUCCCUGCAAGACGGAUCCCCUAAAACUGGAG
--------....((((((..((((((.(((....))).(((((((((((((......)))))).))))))).........))))))........)))))).. ( -34.10)
>DroYak_CAF1 82535 101 - 1
AUCGUUUUCAUAUCGAUUUU-UUAUCACAGUCCGCUGCCCACAGCGAGGGUUACCGCACCUUUUGCUGUGGUCCCUGCAAGACAGAUCCUUUAAAAUUGGAG
............((((((((-........((((((((....)))))((((..((((((.(....).))))))))))....))).........)))))))).. ( -25.73)
>DroAna_CAF1 55554 97 - 1
-----GUUCAUAUAAAUUUAAUUUUAAUAGUUGGCUGCACACAGUGAGGGCUACCGGACCUUCUGCUGUGGUCCCUGCAAGACAGAUCCGCUCAAGCUGGAG
-----........................((.((..((.((((((((((((.....).))))).)))))))).)).))........(((((....)).))). ( -22.80)
>DroPer_CAF1 8964 88 - 1
--------CCUGCCCC------UUCCCCAGUUGGCGGCACACAGCGAGGGGUAUCGCACCUUCUGCUGUGGUCCCUGCAAGACGGAUCCCUUGAAGCUGGAG
--------........------....((((((((.(((.(((((((..((((.....))))..))))))))))))..((((........)))).)))))).. ( -33.50)
>consensus
_____U_UCAUAUCGAUUCUUUCAUCACAGUCCGCUGCCCACAGCGAGGGUUACCGCACCUUCUGCUGUGGUCCCUGCAAGACGGAUCCUCUAAAACUGGAG
.............................(((.((.(.((((((((((((........))))).))))))).)...))..)))...(((.........))). (-21.69 = -21.33 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:27 2006