| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,605,851 – 3,605,958 |
| Length | 107 |
| Max. P | 0.545809 |
| Location | 3,605,851 – 3,605,958 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.40 |
| Mean single sequence MFE | -11.25 |
| Consensus MFE | -8.99 |
| Energy contribution | -9.44 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3605851 107 + 27905053 ACAUACACACUACAGGAUAUUAUAGAAUGUAACUUUAACGUUAUCUACCAAUUAUUUCUUACCUCGAAAUGUAAGUUAUUUGUAAGUUACAAAAUACUUCUUACAUA .............((((.(((.((((...((((......))))))))..)))....))))........(((((((...((((((...))))))......))))))). ( -10.60) >DroSec_CAF1 63551 87 + 1 --------------------UAUGUAAUGUAACUUUCACCUUAUCUACUAAAUUUUUCUUACCUCGAAAUGUAAGUUACUUGUAAGAUACAGCAUACUUCUUACAUA --------------------........(((((((.((................((((.......)))))).))))))).(((((((...........))))))).. ( -10.89) >DroSim_CAF1 56944 87 + 1 --------------------UAUGUAAUGUAACUUUCACCUUAUCUACUAAUUAUUUCUUACCUCGAAAUGUAAGUUACUUGUAAGAUACAGCAUACUUCUUACAUA --------------------........(((((((.................((((((.......)))))).))))))).(((((((...........))))))).. ( -12.27) >consensus ____________________UAUGUAAUGUAACUUUCACCUUAUCUACUAAUUAUUUCUUACCUCGAAAUGUAAGUUACUUGUAAGAUACAGCAUACUUCUUACAUA ............................(((((((.................((((((.......)))))).))))))).(((((((...........))))))).. ( -8.99 = -9.44 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:25 2006