Locus 1195

Sequence ID 3R_DroMel_CAF1
Location 3,604,145 – 3,604,239
Length 94
Max. P 0.816876
window1960

overview

Window 0

Location 3,604,145 – 3,604,239
Length 94
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 79.05
Mean single sequence MFE -25.84
Consensus MFE -17.86
Energy contribution -18.45
Covariance contribution 0.59
Combinations/Pair 1.23
Mean z-score -1.58
Structure conservation index 0.69
SVM decision value 0.67
SVM RNA-class probability 0.816876
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3604145 94 - 27905053
CAAUGGCGCUUUCGUGGUAAUUGGCAUUUGGCUUUGGCUUGUCCGAAUGCCAAACU---GGCUAAACUAAAUGCAUAACUA----GUUUCGGCUU--CUUGUU
...((.(((....))).)).((((((((((((........).)))))))))))...---((((((((((..........))----)))).)))).--...... ( -24.70)
>DroPse_CAF1 6840 87 - 1
CAAUGGCAUUUUCGUGGUAAUUGGCAUUUGGCUUUGGCAUGUCCGAGUGCCAAACUCUGGACUAAGCUAAAUGCAUAACCA----GUGUGC------------
.....((((...(.((((.....(((((((((((......((((((((.....)))).)))).)))))))))))...))))----).))))------------ ( -30.80)
>DroSec_CAF1 61829 88 - 1
CAAUGGCGCUUUCGUGGUAAUUGGCAUUUGGCUUUGGCAUGUCCGAAUGCCAAACU---GGCUAAACUAAAUGCAUAACUA----GUU------U--CUUGUU
(((.((.(((......(((.((((..((((((((((((((......)))))))...---))))))))))).)))......)----)).------)--)))).. ( -22.30)
>DroWil_CAF1 15665 100 - 1
CAAUGGCAUUUUCGCGGUAAUUGGCAUUUGGUUUUGGCAUGCCGGACUGCUAAACU---GGAUACACUAAAUGCAUAAGUAUCAUGUCUAAAGUUCGCUUGUU
....(((((.....((((..((((((((((((........)))))).)))))))))---)(((((.............))))))))))..(((....)))... ( -21.62)
>DroAna_CAF1 49938 94 - 1
CAAUGGCGUUCUCGUGGUAAUUGGCAUUUGGCUUCGGCAUGUCCGAACGCCAAACA---GGGUAAACUAAAUGCAUAACUA----GUUUCGACUU--CUUGUU
...((((((((..((.(....).)).....((....))......))))))))((((---(((.((((((..........))----)))).....)--)))))) ( -24.80)
>DroPer_CAF1 6818 87 - 1
CAAUGGCAUUUUCGUGGUAAUUGGCAUUUGGCUUUGGCAUGUCCGAGUGCCAAACUCUGGACUAAGCUAAAUGCAUAACCA----GUGUGC------------
.....((((...(.((((.....(((((((((((......((((((((.....)))).)))).)))))))))))...))))----).))))------------ ( -30.80)
>consensus
CAAUGGCAUUUUCGUGGUAAUUGGCAUUUGGCUUUGGCAUGUCCGAAUGCCAAACU___GGCUAAACUAAAUGCAUAACUA____GUUUCC___U__CUUGUU
.....((((((...((((..((((((((((((........).))))))))))).......))))....))))))............................. (-17.86 = -18.45 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:24 2006