Locus 1193

Sequence ID 3R_DroMel_CAF1
Location 3,594,937 – 3,595,032
Length 95
Max. P 0.802437
window1955

overview

Window 5

Location 3,594,937 – 3,595,032
Length 95
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 85.96
Mean single sequence MFE -27.70
Consensus MFE -20.95
Energy contribution -22.57
Covariance contribution 1.62
Combinations/Pair 1.19
Mean z-score -1.86
Structure conservation index 0.76
SVM decision value 0.62
SVM RNA-class probability 0.802437
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3594937 95 + 27905053
AAAACUCUACUGAGCGCACCGCUGUGUCGGAGCAGUAAGCAUUACAUUUAACCGAGUGUGUGGUCCAAAUCCCAUUGAGCCACUGGUUACACAGU
........((((...((.(((......))).)).((((.((..((((((....))))))((((..(((......)))..)))))).)))).)))) ( -25.30)
>DroSec_CAF1 45226 88 + 1
AAAACUCUGCUGAGCGCACAUCUCAGUCGGAGUAGUAAGCAUAACAUUUAACCGAGUGUGUGGUC-------CAUUGAGCCACUGGUUACACAGU
...(((((((((((.......))))).)))))).((((.((..((((((....))))))(((((.-------......))))))).))))..... ( -27.00)
>DroSim_CAF1 46067 95 + 1
AAAACUCUACUGAGCGCACCGCUCAGUCGGAGUAGUAAGCAUAACAUUUAACCGAGUGUGUGGUCCAAAUCCCAUUGAGCCACUGGUUACACAGU
...(((((((((((((...)))))))).))))).((((.((..((((((....))))))((((..(((......)))..)))))).))))..... ( -34.00)
>DroYak_CAF1 68882 95 + 1
AAAAGUCUGCUGAGCGCACCGCUGAGUCGAAGUAGUGAGCAUUAUAUUCAAUCGGGUGGGUAGUCUAAAUCCCAUUCAGCUACUGGUUACACAGU
........(((((((.(((..((.......))..))).))...............(((((..........)))))))))).((((......)))) ( -24.50)
>consensus
AAAACUCUACUGAGCGCACCGCUCAGUCGGAGUAGUAAGCAUAACAUUUAACCGAGUGUGUGGUCCAAAUCCCAUUGAGCCACUGGUUACACAGU
...((((((((((((.....))))))).))))).((((.((..((((((....))))))(((((.(((......))).))))))).))))..... (-20.95 = -22.57 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:19 2006