Locus 1189

Sequence ID	3R_DroMel_CAF1
Location	3,579,330 – 3,579,423
Length	93
Max. P	0.626447

overview

Window 7

Location	3,579,330 – 3,579,423
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	87.88
Mean single sequence MFE	-35.30
Consensus MFE	-27.84
Energy contribution	-29.28
Covariance contribution	1.44
Combinations/Pair	1.19
Mean z-score	-1.55
Structure conservation index	0.79
SVM decision value	0.19
SVM RNA-class probability	0.626447
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3579330 93 + 27905053
GCGUCGACUGAGAAAUCCGAGCGCUGCUCCCGAGAGCUCCCGAAAGGACCACGACUCCGACGAAGGCACUUCGGCCCCCGGAGCUUUCGUUCU
..((((...(((...((.((((...))))..))...)))((....))....))))...(((((((((..(((((...)))))))))))))).. ( -31.40)
>DroSec_CAF1 30245 92 + 1
GCGUCGACUGAGAAAUCCGAGCGCUGCUC-CGAGUGCUCUCGAAAGGACUCCGACGCAGACGAAGGCACUUCGGCUCCGGAAGCUUUCGUUCU
((((((...(((......(((((((....-..)))))))((....)).))))))))).(((((((((..((((....)))).))))))))).. ( -39.70)
>DroSim_CAF1 30727 92 + 1
GCGUCGACUGAGAAAUCCGAGCGCUGCUC-CGAGUGCUCCCGAAAGGACUCCGACUCAGACGAAGGCACUUCGGCUCCGGAAGCUUUCGUUCU
(.((((...(((......(((((((....-..)))))))((....)).))))))).).(((((((((..((((....)))).))))))))).. ( -36.30)
>DroEre_CAF1 35603 92 + 1
GCGUCGAGUGAGAAAUCCGAGCGCUGCUC-CGAGCGCUCCCGAGAGGACUCUCUCGCAAACGAAGGCACUUCGGUCCCGGGAGCUUUCGUUCU
..(.((((.(((......(((((((....-..)))))))((....)).))).))))).(((((((((.((.((....)))).))))))))).. ( -39.70)
>DroYak_CAF1 22482 91 + 1
GCGUCGACUGAGAAAUCCGAGAGCGGCAC-CGAGUGCUUCCGAAAGGACUCUC-CGCAAACGAAGGCACUUCGGCAUCGGGAGCUUUAGUUCU
.....(((((((...((((((((.(((((-...)))))(((....))))))))-((....(((((...)))))....)))))..))))))).. ( -29.40)
>consensus
GCGUCGACUGAGAAAUCCGAGCGCUGCUC_CGAGUGCUCCCGAAAGGACUCCGACGCAGACGAAGGCACUUCGGCCCCGGGAGCUUUCGUUCU
((((((...(((......(((((((.......)))))))((....)).))))))))).(((((((((..((((....)))).))))))))).. (-27.84 = -29.28 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:12 2006