Locus 1186

Sequence ID 3R_DroMel_CAF1
Location 3,574,098 – 3,574,218
Length 120
Max. P 0.582129
window1939

overview

Window 9

Location 3,574,098 – 3,574,218
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.17
Mean single sequence MFE -40.90
Consensus MFE -34.72
Energy contribution -34.87
Covariance contribution 0.14
Combinations/Pair 1.18
Mean z-score -1.60
Structure conservation index 0.85
SVM decision value 0.10
SVM RNA-class probability 0.582129
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3574098 120 - 27905053
AAUGGAGCCGAGAUUGUCUUUAAUCCCUCGGCUACGAUCGGCCGCCUAUCGGAGCCAUUGUGGAGCAUUGAGGCACGUAACGCUGCCAUCGCCAAUAGCUACUUUACGGUUCCGAUUAAU
...((.((((((((((....)))))..(((....))))))))..)).(((((((((...((((((....((((((((...)).)))).))((.....))..))))))))))))))).... ( -38.70)
>DroSec_CAF1 25062 120 - 1
AAUGGAGCCGAGAUUGUCUUCAAUCCCUCGGCUACGAUCGGUCGGCUAUCGGAGCCAUUGUGGAGCAUUGAGGCACGUAAUGCUGCCAUCGCCAAUAGCUACUUCACGGUUCCGAUUAAU
.....(((((((((((....)))))(((((....)))..))))))))(((((((((...((((((....((((((.(.....))))).))((.....))..))))))))))))))).... ( -42.50)
>DroSim_CAF1 25432 120 - 1
AAUGGAGCCGAGAUUGUGUUCAAUCCCUCGGCUACGAUCGGUCGGCUAUCGGAGCCAUUGUGGAGCAUUGAGGCACGUAAUGCUGCCAUCGCCAAUAGCUACUUCACGGUUCCGAUUAAU
.....(((((((((((((..(........)..)))))))..))))))(((((((((...((((((....((((((.(.....))))).))((.....))..))))))))))))))).... ( -42.60)
>DroEre_CAF1 30470 120 - 1
AAUGGCGCCGAAAUUGUCUUCAAUCCCUCGGCUACGAUCGGUCGGCUAUCGGAGCCCCUGUGGGGCAUUGAGGCACGUAAUGCUGCCAUCGCCAACAGCUACUUCACGGUGCCGAUUAAU
..((((((((.....(((((((((((((.((((.((((.((....)))))).)))).....)))).))))))).))(((..((((..........)))))))....))))))))...... ( -43.00)
>DroYak_CAF1 17408 120 - 1
AAUGGAGCCGAGAUAGUCUUCAAUCCGUCGGCUACGAUCGGUCGGCUAUCAGAGCCACUGUGGGGCAUUGAGGCACGUAACGCUGCCAUCGCAAAUAGCUACUUCACGGUUCCGAUCAAU
.....(((((((((........)))..))))))..((((((..((((.....))))(((((((((....((((((((...)).)))).))((.....))..))))))))).))))))... ( -42.20)
>DroAna_CAF1 20649 120 - 1
AAUGGAGCCGAGAUUGUCUUCAAUCCCUCGGCUACUAUAGGACGCCUCUCGGAGCCACUUUGGAGCAUUGAGGCAAGGAAUGCUGCGAUCGCCAAUAGUUACUUUACGGUUCCCAUAAAU
.(((((((((((((((....)))))..)))))).))))............((((((...((((.(.((((.((((.....)))).))))).))))..((......))))))))....... ( -36.40)
>consensus
AAUGGAGCCGAGAUUGUCUUCAAUCCCUCGGCUACGAUCGGUCGGCUAUCGGAGCCACUGUGGAGCAUUGAGGCACGUAAUGCUGCCAUCGCCAAUAGCUACUUCACGGUUCCGAUUAAU
...(.(((((((((((....)))))..)))))).)((((((..((((.....))))(((((((((....((((((.(.....))))).))((.....))..))))))))).))))))... (-34.72 = -34.87 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:04 2006