Locus 1185

Sequence ID 3R_DroMel_CAF1
Location 3,572,428 – 3,572,531
Length 103
Max. P 0.767911
window1938

overview

Window 8

Location 3,572,428 – 3,572,531
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.80
Mean single sequence MFE -23.97
Consensus MFE -21.04
Energy contribution -21.08
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.42
Structure conservation index 0.88
SVM decision value 0.52
SVM RNA-class probability 0.767911
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3572428 103 - 27905053
-----------------GAAAACUGAUUCAAGGCCUCGAUUGCAUUACCCAUUCGACAUGUUGCUAAUAAAUAUGUUUUCCGGGGAAAGCCAAAUAAAACCCAAAGUGACAGAGGUCCUU
-----------------............((((((((..(..(...........((((((((.......))))))))....(((...............)))...)..)..)))).)))) ( -23.36)
>DroSec_CAF1 23388 103 - 1
-----------------GAAAACUGAUUCAAGGCCUCGAUUGCAUUACCCAUUCGACAUGUUGCUAAUAAAUAUGUUUUCCGGGGAAAGCCAAAUAAAACCCAAAGUGACAGAGGUCCUU
-----------------............((((((((..(..(...........((((((((.......))))))))....(((...............)))...)..)..)))).)))) ( -23.36)
>DroSim_CAF1 23747 103 - 1
-----------------GAAAACUGAUUCAAGGCCUCGAUUGCAUUACCCAUUCGACAUGUUGCUAAUAAAUAUGUUUUCCGGGGAAAGCCAAAUAAAACCCAAAGUGACAGAGGUCCUU
-----------------............((((((((..(..(...........((((((((.......))))))))....(((...............)))...)..)..)))).)))) ( -23.36)
>DroEre_CAF1 28786 103 - 1
-----------------GAAAACUGAUUCAAGGCCUCGAUUGCAUUACCCAUUCGACAUGUUGCUAAUAAAUAUGUUUUCCGGGGAAAGCCAAAUAAAACCCAAAGUGACAGAGGUCCUU
-----------------............((((((((..(..(...........((((((((.......))))))))....(((...............)))...)..)..)))).)))) ( -23.36)
>DroAna_CAF1 19036 119 - 1
CACACACAAAACAGGACGAGA-AAGAUCCAAGGCCUCGAUUGCAUUACCCAUUCGACAUGUUGCUAAUAAAUAUGUUUUUCGAGGAAAGCCAAAUAAAAUCCAAUGUGACAGAGGUCUCU
.............((((....-..).))).(((((((..(..((((......((((((((((.......))))))....))))(((.............)))))))..)..))))))).. ( -26.42)
>consensus
_________________GAAAACUGAUUCAAGGCCUCGAUUGCAUUACCCAUUCGACAUGUUGCUAAUAAAUAUGUUUUCCGGGGAAAGCCAAAUAAAACCCAAAGUGACAGAGGUCCUU
...............................((((((..(..(...........((((((((.......))))))))....(((...............)))...)..)..))))))... (-21.04 = -21.08 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:03 2006