a score=0
s 3R_DroMel_CAF1 3571947 109 + 27905053 AUCGCACACACUUAACGAGCACUUAAGCGUCUUCGCUUGGAGCUGCUUAGCUCGAAAUAUUAUGUUUAAUUAAAUAUGAGCUCAUAAUCGAGUUCUCCCAUUAAAC-CUG
s DroSec_CAF1 22907 109 + 1 AUCGCACACACUUAACGAGCACUUAAGCGUCUUCGCUCGGAGCUGCUUAGCUCGAAAUAUUAUGUUUAAUUAAAUAUGAGCUCAUAAUCGGGUUCCCCCAUUAAGC-CUG
s DroSim_CAF1 23266 109 + 1 AUCGCACACACUUAACGAGCACUUAAGCGUCUUCGCUCGGAGCUGCUUAGCUCGAAAUAUUAUGUUUAAUUAAAUAUGAGCUCAUAAUCGGGUUCCUCCAUUAAGC-CUG
s DroEre_CAF1 28306 108 + 1 AUCGCACACACUUAACUAGCACUUAAGCGUCUUCGCUCGGAGCUGCUUAGCUCUAAAUAUUAUGUUUAAUUAAAUAUGAGCUCAUAAUCGAGUUGC-CCAUUAAAC-CUG
s DroAna_CAF1 18565 95 + 1 -------ACACUUAACGAGCUCUUAAACGUCUCC----UGAGCUGUUUAGCUCUAAAUAUUACAUUUAAUUAAAUAUGAGCUCAUAAUCGCUU-CUCC---UAACCCCGG