Locus 1182

Sequence ID 3R_DroMel_CAF1
Location 3,570,972 – 3,571,068
Length 96
Max. P 0.926170
window1934

overview

Window 4

Location 3,570,972 – 3,571,068
Length 96
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 87.96
Mean single sequence MFE -32.88
Consensus MFE -28.48
Energy contribution -28.20
Covariance contribution -0.28
Combinations/Pair 1.15
Mean z-score -1.78
Structure conservation index 0.87
SVM decision value 1.17
SVM RNA-class probability 0.926170
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3570972 96 - 27905053
GCAGC--------------AAAAUUGGAAAGGAAAUGUGAUGCCGGGCGGCAUUGUUGGUGCUCCGAGUGAAAUGCUUUGGUGCUGCUGAUGGUGGCGAUGGCAAUGGCA
((.((--------------(...((....))....)))..(((((..((.(((..(..((((.((((((.....)).)))).)).))..)..))).)).)))))...)). ( -31.50)
>DroSec_CAF1 21991 96 - 1
GCAGC--------------AAAAUUGGAAAGGAAAUGUGAUGCCGGGCGGCAUUGUUGGUGCUCCAAGUGAAAUGCUUUGGUGCUGCUGAUGGUGGCGAUGGCAAUGGCA
((.((--------------(...((....))....)))..(((((..((.(((..(..((((.((((((.....)).)))).)).))..)..))).)).)))))...)). ( -31.80)
>DroSim_CAF1 22306 96 - 1
GCAGC--------------AAAAUUGGAAAGGAAAUGUGAUGCCGGGCGGCAUUGUUGGUGCUCCAAGUGAAAUGCUUUGGUGCUGCUGAUGGUGGCGAUGGCAAUGGCA
((.((--------------(...((....))....)))..(((((..((.(((..(..((((.((((((.....)).)))).)).))..)..))).)).)))))...)). ( -31.80)
>DroEre_CAF1 27311 109 - 1
GCAGCAGGCAUG-GCGAGGAAAAUUGGAAAGGAAAUGUGAUGCCGGGCGGCAUUGUUGCUGCGCCGAGUGAAAUGCUUUGGGCCUGGUGAUGGUGGCGAUGGCGAUGGCG
((.((.(((((.-(((.......((....))....))).)))))..))(.((((((..((((((((.((..((....))..)).))))).)))..)))))).)....)). ( -37.00)
>DroYak_CAF1 14738 110 - 1
GCAGCAGGCACGGGCGAGGAAAAUUGGAAAGGAAAUGUGAUGCCGGGCGGCAUUGUUGGUGCUCCGAGUGAAAUGCUUUGGGGCUGGAGAUGGUGGCGAUGGCAAUGGCG
((.(((....(...(.((.....)).)...)....)))..(((((..((.(((..((...(((((((((.....)).)))))))....))..))).)).)))))...)). ( -32.30)
>consensus
GCAGC______________AAAAUUGGAAAGGAAAUGUGAUGCCGGGCGGCAUUGUUGGUGCUCCGAGUGAAAUGCUUUGGUGCUGCUGAUGGUGGCGAUGGCAAUGGCA
...................................(((.((((((..((.(((..(((((((.((((((.....)).)))).)).)))))..))).)).))))).).))) (-28.48 = -28.20 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:59 2006