| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 671,352 – 671,455 |
| Length | 103 |
| Max. P | 0.977093 |
| Location | 671,352 – 671,455 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 75.48 |
| Mean single sequence MFE | -30.42 |
| Consensus MFE | -9.72 |
| Energy contribution | -10.55 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.11 |
| Structure conservation index | 0.32 |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.977093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 671352 103 - 27905053 AGGCCUGAAGACCUCAAGUCGCUCGCAAAUAUUUGAGGAAACACAAAGG-AAACAGGG-CGAAGGGCAAUGUGUCAAUGGCGGGAGAAGGCGCUGCCAAGGACCC ..((((((.....))...((((((.......((((.(....).))))(.-...).)))-))).)))).....(((..(((((((......).))))))..))).. ( -32.70) >DroPse_CAF1 91825 95 - 1 UCGCCUGAAG--------UU-CGGGGCAAUAUUUGAUAAAAUACAAAAGCGAACAAGG-CGAAUAGAAAUGUGUCAAUGGCAGGAGAAGAAGCUGCCAAGGACCC ((((((...(--------((-((......(((((....)))))......))))).)))-)))(((....)))(((..((((((.........))))))..))).. ( -28.90) >DroSim_CAF1 88386 102 - 1 AGGCCUAAAGGCCUAAAGUCGCUCGCAAAUAUUUGAGGAAACACAAAGG-AAACGGGG-CGA-GGGCAAUGUGUCAAUGGCGGGAGAAGGGGCUGCCAAGGACCC (((((....)))))...(((.(((((.....((((.(....).))))(.-...)...)-)))-)))).....(((..((((((.........))))))..))).. ( -38.50) >DroYak_CAF1 99560 95 - 1 AGGCCUGAAG--------CCGUUAGCAAAUAUUUGAGGAAACACAAAGG-AAACGGAG-CGAACGGCAAUGUGUCAAUGGCGGAAUAAGGAGCUGCCAAGGACCC .(((((...(--------(((((.((.....((((.(....).))))(.-...)...)-).))))))..........((((((.........))))))))).)). ( -32.30) >DroAna_CAF1 90746 86 - 1 AGGCCUGAA--------GUUGCUGGCAAAUAUUUGAAAAAAUACAAUGG-AAAAGGAACCGAAUGGCAAUGUGUCAAUG----------GAGCUGGCAAGGACCC .(((((...--------..(((..((...(((((....)))))......-........(((..((((.....)))).))----------).))..)))))).)). ( -21.20) >DroPer_CAF1 92861 95 - 1 UCGCCUGAAG--------UU-CGGGGCAAUAUUUGAUAAAAUACAAAAGCGAACAAGG-CGAAUAGAAAUGUGUCAAUGGCAGGAGAAGAAGCUGCCAAGGACCC ((((((...(--------((-((......(((((....)))))......))))).)))-)))(((....)))(((..((((((.........))))))..))).. ( -28.90) >consensus AGGCCUGAAG________UCGCUGGCAAAUAUUUGAGAAAACACAAAGG_AAACAGGG_CGAAUGGCAAUGUGUCAAUGGCGGGAGAAGGAGCUGCCAAGGACCC ...............................((((.(....).)))).........................(((..((((((.........))))))..))).. ( -9.72 = -10.55 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:37 2006