Locus 1178

Sequence ID 3R_DroMel_CAF1
Location 3,567,726 – 3,567,825
Length 99
Max. P 0.513172
window1928

overview

Window 8

Location 3,567,726 – 3,567,825
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 94.44
Mean single sequence MFE -31.73
Consensus MFE -28.32
Energy contribution -29.07
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.89
SVM decision value -0.04
SVM RNA-class probability 0.513172
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3567726 99 + 27905053
UAACGUUAUUGGCAGCUGGCAAUAACAACGCCGUCAUGGGCAGCAUGUGGCUGAGGAUCGUGAAAAACAGAGUGAGAACUACUGCCACCCAACUGUCCG
....(((((((.(....).)))))))...((((.((((.....))))))))...((((.((......((((((....))).))).......)).)))). ( -28.32)
>DroSec_CAF1 18677 99 + 1
UAACGUUAUUGGCAGCUGGCAAUAACAACGCCGUCAUGGGCAGCAUGUGGCUGCGGAUCCUGAAAAACAGUGUGCGAACUGCUGCCACACAACUGUCCG
....(((((((.(....).)))))))...........((((((..((((((.((((.(((((.....))).....)).)))).))))))...)))))). ( -35.60)
>DroSim_CAF1 18986 99 + 1
UAACGUUAUUGGCAGCUGGCAAUAACAACGCCGUCAUGGGCAGCAUGUGGCUGCGGAUCCUGAAAAACAGAGUGCGAACUGCUGCCACCCAACUGUCCG
....(((((((.(....).)))))))...........((((((...(((((.((((.(((((.....))).....)).)))).)))))....)))))). ( -33.80)
>DroEre_CAF1 23763 99 + 1
UAACGUUAUUGGCAGCUGGCAAUAACAACACCAUCAUGGGCAGCAUGUGGCUGCGCAUCCAGAAAAACAGAGUGCGAACUGCUGCCACCCAACUGUCGG
....(((((((.(....).)))))))....((..((((((..(((.(..(...((((..(.........)..))))..)..))))..))))..))..)) ( -29.20)
>consensus
UAACGUUAUUGGCAGCUGGCAAUAACAACGCCGUCAUGGGCAGCAUGUGGCUGCGGAUCCUGAAAAACAGAGUGCGAACUGCUGCCACCCAACUGUCCG
....(((((((.(....).)))))))...........((((((...(((((.((((.((................)).)))).)))))....)))))). (-28.32 = -29.07 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:54 2006