| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,567,503 – 3,567,620 |
| Length | 117 |
| Max. P | 0.609957 |
| Location | 3,567,503 – 3,567,620 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 89.22 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -22.26 |
| Energy contribution | -21.88 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.609957 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3567503 117 + 27905053 AAUCGAGUUCUAUUAAUCUCUCGACGAACUCCACAAACUUCGAGCAUCGCCACAGUCAAGUACUUAGCACCUUGUUAGUUAUUGAUAGCUCGUUUAUUUUGAGUUCAAGCUCGUCCA ...((((((.......((....)).((((((.........(((((((((..((...((((..........))))...))...)))).)))))........)))))).)))))).... ( -23.93) >DroSec_CAF1 18456 115 + 1 AAUCGAGUUCUAUUAAUCUCUCGACGAGCUCUCCAAACUGCGAGCAUCGG--CAGUGAAGUACUUAGCACCUUGUUAGUUAUUGAUAGCUCGUUUAUUUUGAGUUCAAGCUCGUUCA ..(((((............)))))(((((((((.(((..((((((.....--((((((.....(((((.....)))))))))))...))))))...))).)))....)))))).... ( -29.20) >DroSim_CAF1 18765 115 + 1 AAUCGAACUCUAUUUAUCUCUCGACGAGCUCUCCAAACUGCGAGCAUCGG--CAGUGAAGUACUUAGCACCUUGUUAGUUAUUGAUAGCUCGUUUAUUUUGAGUUCAAGCUCGUCCA ......................(((((((((((.(((..((((((.....--((((((.....(((((.....)))))))))))...))))))...))).)))....)))))))).. ( -29.40) >DroEre_CAF1 23534 115 + 1 AAUUGAGUUCCAUUAAUCUCUCAACGAGCUGUCUAAAUUGUGAGCAUCAG--CAGUGUAGUACUUAGCACCUGGUUAAAUAUUGAUAGCUCGUUUAUAUUGAGUUCAAGCUCGUCCA ....(((((...(((((.....(((((((((((.....(((....(((((--..((((........)))))))))...)))..)))))))))))...))))).....)))))..... ( -28.00) >consensus AAUCGAGUUCUAUUAAUCUCUCGACGAGCUCUCCAAACUGCGAGCAUCGG__CAGUGAAGUACUUAGCACCUUGUUAGUUAUUGAUAGCUCGUUUAUUUUGAGUUCAAGCUCGUCCA ..(((((............))))).((((((........((((((((((..........(((.(((((.....))))).))))))).)))))).......))))))........... (-22.26 = -21.88 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:53 2006