Locus 1176

Sequence ID 3R_DroMel_CAF1
Location 3,565,869 – 3,565,962
Length 93
Max. P 0.619129
window1926

overview

Window 6

Location 3,565,869 – 3,565,962
Length 93
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 84.91
Mean single sequence MFE -26.55
Consensus MFE -19.52
Energy contribution -19.77
Covariance contribution 0.25
Combinations/Pair 1.13
Mean z-score -1.57
Structure conservation index 0.74
SVM decision value 0.17
SVM RNA-class probability 0.619129
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3565869 93 - 27905053
CUCCGAUGGGAGGCGAAAAAUAACCGGCAAUGUCAGAACAUUGUGAUGUUUUAAGCAU-------------UGUUGUCUUUACUCGGAUGAAAUCUGAUCGAACUU
((((....)))).(((........(((((((((.(((((((....)))))))..))))-------------))))).......((((((...)))))))))..... ( -23.90)
>DroSec_CAF1 16823 106 - 1
CUCCGAUGGGAGGCGAAAAAUAACCAGCAAUGUCAGAACAUUGUGAUGUUUUAAGCAUUGUUCGAUUGCAUUGUUGUCUUUAUUCGUAUGAAAUCUGAUCGAGCUU
...((((.(((.(((((.((....(((((((((..(((((.(((..........))).)))))....)))))))))...)).)))))......))).))))..... ( -29.60)
>DroSim_CAF1 17126 106 - 1
CUCCGAUGGGAGGCGAAAAAUAACCAGCAAUGUCAGAACAUUGUGAUGUUUUAAGCAUUGUUCGAUUGCAUUGUUGUCUUUAUUCGGAUGAAAUCUGAUCGAGCUU
((((....))))((..((((((....(((((((....)))))))..))))))..))...(((((((((.(((.(..(((......)))..)))).))))))))).. ( -29.20)
>DroEre_CAF1 21899 102 - 1
--CUGAAUGGGAGCGAAAAAUAACCAGCAAUGUCAGAACAUUGUGAUGUUUUAAGCAUUGUUCGAUUGCAUUGCUG--CUUACUUGGAUGAAAUCUGAUCGAUUAU
--...........(((....(((.(((((((((..(((((.(((..........))).)))))....)))))))))--.))).(..(((...)))..))))..... ( -23.50)
>consensus
CUCCGAUGGGAGGCGAAAAAUAACCAGCAAUGUCAGAACAUUGUGAUGUUUUAAGCAUUGUUCGAUUGCAUUGUUGUCUUUACUCGGAUGAAAUCUGAUCGAGCUU
.(((((..((((((..((((((....(((((((....)))))))..)))))).((((.(((......))).))))))))))..))))).................. (-19.52 = -19.77 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:52 2006