| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,552,856 – 3,552,950 |
| Length | 94 |
| Max. P | 0.670142 |
| Location | 3,552,856 – 3,552,950 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 79.90 |
| Mean single sequence MFE | -22.43 |
| Consensus MFE | -15.30 |
| Energy contribution | -15.18 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670142 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3552856 94 - 27905053 UUCAUACACGGGUAGU-------GCCAACAAUUGGCCUUCGAAGGGUCGGAUGUUUGGCGAGAAAAAAAAGGAGACUGAGACUGAAACUGAAAUAGAAUUU ........(((.((((-------(((((((.(((((((.....))))))).)).)))))..........((....))...))))...)))........... ( -24.10) >DroSec_CAF1 11687 93 - 1 UCCAUACACGGCUAGU-------GCCAACAAUUGGCCUACGAAGGGUCGGAUGUUUGGCGAGAAAA-AAAGGAGACUGAAACUGAAACAGAAAUAGAAUUC ............((((-------(((((((.(((((((.....))))))).)).))))).......-..((....))...))))................. ( -20.40) >DroSim_CAF1 11953 93 - 1 UCCAUACACGGCUAGU-------GCCAACAAUUGGCCUCCGAAGGGUCGGAUGUUUGGCGAGAAAA-AAAGGAGACUGAAACUGAAACAGAAAUAGAAUUC .(((.(((.(((((((-------.......)))))))(((((....)))))))).)))........-..((....))....(((...)))........... ( -21.10) >DroEre_CAF1 16355 87 - 1 UUCAUACAUAGCUAGUGCUAUGUGCCAACAAUUAGCUUUUGAGGGGCCGGAUGUUUGGCAAGAAAA-AAGA-------------AAGCUGAAAUAGAAUUC (((.((((((((....)))))))).......(((((((((.....(((((....))))).......-..))-------------)))))))....)))... ( -24.14) >consensus UCCAUACACGGCUAGU_______GCCAACAAUUGGCCUUCGAAGGGUCGGAUGUUUGGCGAGAAAA_AAAGGAGACUGAAACUGAAACAGAAAUAGAAUUC .......................(((((((.(((((((.....))))))).)).))))).......................................... (-15.30 = -15.18 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:48 2006