| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 670,587 – 670,692 |
| Length | 105 |
| Max. P | 0.778559 |
| Location | 670,587 – 670,692 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 77.32 |
| Mean single sequence MFE | -24.48 |
| Consensus MFE | -16.18 |
| Energy contribution | -16.15 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 670587 105 + 27905053 CGAAAAGUGUUGAAGGCAGGAGCC-A---AA-------CGGUUGUCAGUCAGCCAGAAGAGCGAGUAGAAAAGC-CAACGACUUCCACUUGAACACUUUUUAAUGAAAAGCCACCAC .((((((((((.(((...((((.(-.---..-------.(((((.....)))))....(.((..........))-)...).))))..))).))))))))))................ ( -25.00) >DroPse_CAF1 91029 97 + 1 CGGAAAGUGUUAAAGGCAGCCACUUA---AG-------AGAUUGUCC----------AGAGCAAGUAGAAAAGCCUAACGACUUCCACUCGAACACUUUUCAAUGAAAAUCCACCAC .((((((((((..((((.....((..---..-------)).((((..----------...))))........))))..(((.......)))))))))))))................ ( -18.70) >DroEre_CAF1 86639 105 + 1 CGAAAAGUGUUGAAGGCAGGAGCC-A---AA-------CUGUUGUCAGUCAGCCAGAA-AGCGAGUAGAAAAGCCCAACGACUUCCACUUGAACACUUUUCAAUGAAAAGCCACCAC .((((((((((.(((((((.....-.---..-------))))((..((((.((.....-.))(.((......)).)...))))..))))).))))))))))................ ( -26.40) >DroYak_CAF1 98786 106 + 1 CGAAAAGUGUUGAAGGCAGGAGCC-A---AA-------CGGUUGUCAGUGAGCCAAAAGAGCGAGUAGAAGAGCCCAACGACUUCCACUUGAACACUUUUCAAUGAAAAUCCACCAU .((((((((((...(((....)))-.---..-------.((((.......)))).......(((((.((((..........)))).)))))))))))))))................ ( -27.10) >DroAna_CAF1 89977 110 + 1 CGGAAAGUGUUAAAGGCAAAAGCC-ACUUAAGGGCAGAGAGAUUUUAGUCA------AAGGCAAGUAGAAACGCCUAAUGGCUUCCACUUGAACACUUUUCAAUGCAAAUCCUCGAC .((((((((((...(((....)))-.(((...(((.(((....))).))).------))).(((((.(((..(((....)))))).)))))))))))))))................ ( -28.80) >DroPer_CAF1 92065 97 + 1 CGGAAAGUGUUAAAGGCAGCCACUUG---AG-------AGAUUGUCC----------AGAGCAAGUAGAAAAGCCUAACGACUUCCACUCGAACACUUUUCAAUGAAAAUCCACCAC .((((((((((..((((..(.(((((---..-------.(......)----------....))))).)....))))..(((.......)))))))))))))................ ( -20.90) >consensus CGAAAAGUGUUAAAGGCAGGAGCC_A___AA_______CGGUUGUCAGUCA______AGAGCAAGUAGAAAAGCCCAACGACUUCCACUUGAACACUUUUCAAUGAAAAUCCACCAC .((((((((((...(((....))).....................................(((((.(((............))).)))))))))))))))................ (-16.18 = -16.15 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:36 2006