Locus 1169

Sequence ID 3R_DroMel_CAF1
Location 3,547,119 – 3,547,220
Length 101
Max. P 0.946373
window1917

overview

Window 7

Location 3,547,119 – 3,547,220
Length 101
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 69.71
Mean single sequence MFE -21.82
Consensus MFE -8.66
Energy contribution -8.90
Covariance contribution 0.24
Combinations/Pair 1.29
Mean z-score -2.09
Structure conservation index 0.40
SVM decision value 1.36
SVM RNA-class probability 0.946373
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3547119 101 + 27905053
CAACUUGGUUUGUGGGUACUCACACACCAAAAA-AAAACGCGGGUUUGUCUGAAUUAAACCCAAACAUAAAUACUUGG--CUUA------UAUUUAAAGCUAUUUUUUCA
....(((((.(((((....))))).)))))(((-(((....(((((((.......))))))).............(((--(((.------......)))))))))))).. ( -24.20)
>DroSec_CAF1 6011 99 + 1
CAACUUGGUUUGUGGGUACUCACAGACCAAAA---AAAUAUGAGUUUGUUUGAAUUAAACCCAAAAACAAGUACUGGG--CUUU------UAUUUAAAGCGAUUUUUUCA
....(((((((((((....)))))))))))..---.....((((.((((((((((.(((((((...........))))--.)))------.)))).))))))....)))) ( -24.00)
>DroSim_CAF1 6296 99 + 1
CAACUUGGUUU---GGUACUCACAGACCAAAAAAAAAAUAAGAGUUUGUUUGAAUUAAGCCCAAAAACAAAUACUGGG--CUUU------UAUUUAAAGCGAUUUUUUCA
....(((((((---(.......)))))))).........(((((((..(((((((.(((((((...........))))--))).------.)))))))..)))))))... ( -25.00)
>DroEre_CAF1 6443 94 + 1
CAACUUGGUUUGUGGGCAGUAACACACCAACA---AAAUGUGGGUUUGUUUCAGGUAAGGACAUAAGCAAAAACUU--UAUGUUUGUUUACAUUU-----------GUUA
.(((......(((((((.(.((((.(((.((.---....)).))).)))).)......(((((((((.......))--))))))))))))))...-----------))). ( -18.20)
>DroYak_CAF1 6921 106 + 1
CAACUUGGUUUGUGGGUAGUCAUACACUAAAA---AAAAAGUUGUUUGUUUGAAGUUAGCACAAAAACAAAAACUUGGUAUACAUACAUACAUUUAAAGCCCGCU-UUUA
...........((((((...............---...(((((.(((((((...((....))..)))))))))))).((((......)))).......)))))).-.... ( -17.70)
>consensus
CAACUUGGUUUGUGGGUACUCACACACCAAAA___AAAUAUGAGUUUGUUUGAAUUAAGCCCAAAAACAAAUACUUGG__CUUU______UAUUUAAAGCGAUUUUUUCA
....(((((.(((((....))))).)))))..............(((((((.............)))))))....................................... ( -8.66 =  -8.90 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:43 2006