Locus 1168

Sequence ID 3R_DroMel_CAF1
Location 3,545,915 – 3,546,022
Length 107
Max. P 0.732373
window1916

overview

Window 6

Location 3,545,915 – 3,546,022
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 92.10
Mean single sequence MFE -34.02
Consensus MFE -30.50
Energy contribution -31.20
Covariance contribution 0.69
Combinations/Pair 1.03
Mean z-score -1.35
Structure conservation index 0.90
SVM decision value 0.43
SVM RNA-class probability 0.732373
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3545915 107 + 27905053
GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCGUGUGAUGUGAUGACGGGUACGUUGUCACGCAGGCGAAU-----GGGAUUCCGGAAG--------
.........((((((((........((((.((((((...(((.(((...)))))).))))))((((..(((....)))..))))...))))..)-----)))))))......-------- ( -33.40)
>DroSec_CAF1 4799 107 + 1
GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCGUGUGAUGUGAUGACGGGUACGUUGUCACGCAGGCGGAU-----GGGAUUCCGGAAG--------
.........((((((((........((((.((((((...(((.(((...)))))).))))))((((..(((....)))..))))...))))..)-----)))))))......-------- ( -34.50)
>DroSim_CAF1 5076 107 + 1
GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCGUGUGAUGUGAUGACGGGUACGUUGUCACGCAGGCGAAU-----GGGAUUCCGGAAG--------
.........((((((((........((((.((((((...(((.(((...)))))).))))))((((..(((....)))..))))...))))..)-----)))))))......-------- ( -33.40)
>DroEre_CAF1 5088 106 + 1
GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCGUGUGAUGUGAUGACGGGUACGUUGUCACGCAG-CGGAU-----GGGAUUCCGGAAG--------
.........((((((((....((.((((((((....))))..((((...)))))))).((.(((((..(((....)))..))))))))-)...)-----)))))))......-------- ( -33.50)
>DroYak_CAF1 5581 107 + 1
GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCGUGUGAUUUGAUGACGGGUACGUUGUCACGCAGGCGAAU-----GGGAUUCCGGAAG--------
.........((((((((...........((((....))))........(((((((((.......((..(((....)))..)))))))))))..)-----)))))))......-------- ( -31.01)
>DroAna_CAF1 1731 120 + 1
GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCAUGUGAUGUGAUGACGGGGACGUUGUCACGGAGCAAAAUUGGAAGGGAUUCCCCCAAUCCCCUUA
............((((((...((....((.((((((..((((.(((...)))))))))))))((((..(((....)))..)))))).))....))))))((((((.....)))))).... ( -38.30)
>consensus
GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCGUGUGAUGUGAUGACGGGUACGUUGUCACGCAGGCGAAU_____GGGAUUCCGGAAG________
.........(((((((.........((((.((((((..((((.(((...)))))))))))))((((..(((....)))..))))...))))........))))))).............. (-30.50 = -31.20 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:42 2006