Locus 1165

Sequence ID 3R_DroMel_CAF1
Location 3,519,722 – 3,519,820
Length 98
Max. P 0.967235
window1912

overview

Window 2

Location 3,519,722 – 3,519,820
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 92.45
Mean single sequence MFE -26.04
Consensus MFE -26.66
Energy contribution -25.46
Covariance contribution -1.20
Combinations/Pair 1.22
Mean z-score -1.35
Structure conservation index 1.02
SVM decision value 1.61
SVM RNA-class probability 0.967235
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3519722 98 - 27905053
UUAGCUGUGCAAUAUUCUCUAGGAAAUUAGUUUCCCUUACGGGAAUCGCUGCUUAUAUCGAUACGGCGAACCUUCGCUGCAAUCUCCAGGGAAACCUC
..............((((((.(((...(((((((((....)))))..))))........(((.((((((....))))))..))))))))))))..... ( -25.60)
>DroSec_CAF1 2481 98 - 1
UUAGCUGUGCAAUGUUCUCUAGGAAAUUAGCUUCCCUUACGGGAAUCGCUGCUUAUAUCGAUACGGCGAACCUUCGCUGCAAUCUCCAGGGAGACCUC
..............((((((.(((...(((((((((....)))))..))))........(((.((((((....))))))..))))))))))))..... ( -26.60)
>DroSim_CAF1 2480 98 - 1
UUAGCUGUGCAAUAUUCUCUAGGAAAUUAGUUUCCCUUACGGGAAUCGCUGCUUAUAUCGAUACGGCGAACCUUCGCUGCAAUCUCCAGGGAGACCUC
..............((((((.(((...(((((((((....)))))..))))........(((.((((((....))))))..))))))))))))..... ( -25.30)
>DroEre_CAF1 2456 98 - 1
CUAGCUAUGCAAUAUUCUCUGGGAAAUUAGUUUCCCUGACGGGAAUCGCUGCUUAUAUCGAUAUGGCGAACAUUUGCCGCAAUCUCCAGGGGAACCUC
..............(((((((((....(((((((((....)))))..))))........(((.((((((....))))))..))))))))))))..... ( -26.40)
>DroYak_CAF1 2514 98 - 1
CUAGCUAUGCACUAUUCUCUAGGAAAUUAGUUUCCCUUAUGGGAACUGCUGCUUAUAUCGAUACGGCGAACCUUUGCCGCAAUCUCCAGGGAAACCUC
..............((((((.(((...(((((((((....)))))..))))........(((.((((((....))))))..))))))))))))..... ( -26.30)
>consensus
UUAGCUGUGCAAUAUUCUCUAGGAAAUUAGUUUCCCUUACGGGAAUCGCUGCUUAUAUCGAUACGGCGAACCUUCGCUGCAAUCUCCAGGGAAACCUC
..............((((((.(((...(((((((((....)))))..))))........(((.((((((....))))))..))))))))))))..... (-26.66 = -25.46 +  -1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:38 2006