Locus 1164

Sequence ID 3R_DroMel_CAF1
Location 3,518,655 – 3,518,753
Length 98
Max. P 0.642745
window1911

overview

Window 1

Location 3,518,655 – 3,518,753
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.18
Mean single sequence MFE -40.58
Consensus MFE -29.02
Energy contribution -28.97
Covariance contribution -0.05
Combinations/Pair 1.47
Mean z-score -1.20
Structure conservation index 0.71
SVM decision value 0.23
SVM RNA-class probability 0.642745
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3518655 98 - 27905053
CACUUGGAGUGGCGAAGUGGUUAUGUUGCUGCUGUCCCUCCGCCUCCUGCCCAGAGUGUUGCUAAUGGUUCGCGGCGGCGGCAGAGGAGCGUUGAAAU
(((((.(.....).)))))........(((.((.(.((.(((((.(..(((...((.....))...)))..).))))).)).).)).)))........ ( -32.10)
>DroVir_CAF1 1584 98 - 1
CAGCAUAAGCGGCGAUGUGGUUAUGUUGCUGCUAUCUCGACGCCGCCGGCCCAGCGUGCUGCUAAUGGUGCGCGGCGGUGGUAGCGGCGCGGUAAAAU
.......(((((((((((....)))))))))))...(((.(((((((.((((.(((..((......))..))).).))).)..)))))))))...... ( -42.50)
>DroPse_CAF1 1426 98 - 1
CAGCUGCAGUGGUGAUGUGGUAAUGUUGCUGCUGUCCCGUCGCCGCCGCCCCAGAGUGCUGCUGAUGGUGCGAGGCGGCGGCAGGGGGGCACUGAAGU
..(((((((..(..((((....))))..)..))))(((.(.(((((((((.....(..((......))..)..)))))))))).))))))........ ( -48.40)
>DroGri_CAF1 7319 98 - 1
AAGCAUUAGUGGCGAUGUGGUUAUAUUACUGCUAUCUCGUCGCCGCCGGCCCAGUGUGCUGCUAAUAGUCCUCGGUGGUGGCAGCGGUGCCUGAAAAU
........(((((((((.(((............))).))))))))).(((((.((.(((..(((...(....)..)))..))))))).)))....... ( -33.50)
>DroEre_CAF1 1432 98 - 1
CACUUGGAGUGGCGAAGUGGUUAUGUUGCUGCUGUCCCUCCGCCGCCGUCCAAGCGUAUUGCUAAUCGUUCGCGGCGGCGGCAAAGGAGCGUUGAAAU
..(((((((.((...((..((......))..))..))))))((((((((((.((((..........)))).).))))))))).)))............ ( -38.60)
>DroPer_CAF1 1414 98 - 1
CAGCUGCAGUGGUGAUGUGGUAAUGUUGCUGCUGUCCCGUCGCCGCCGCCCCAGAGUGCUGCUGAUGGUGCGAGGCGGCGGCAGGGGGGCACUGAAGU
..(((((((..(..((((....))))..)..))))(((.(.(((((((((.....(..((......))..)..)))))))))).))))))........ ( -48.40)
>consensus
CAGCUGCAGUGGCGAUGUGGUUAUGUUGCUGCUGUCCCGUCGCCGCCGGCCCAGAGUGCUGCUAAUGGUGCGCGGCGGCGGCAGAGGAGCGUUGAAAU
..(((..(((((((((((....)))))))))))...((((.(((((((.((....(..((......))..)..))))))))).)))))))........ (-29.02 = -28.97 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:37 2006