| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,518,307 – 3,518,400 |
| Length | 93 |
| Max. P | 0.855624 |
| Location | 3,518,307 – 3,518,400 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 80.56 |
| Mean single sequence MFE | -39.57 |
| Consensus MFE | -25.86 |
| Energy contribution | -24.17 |
| Covariance contribution | -1.69 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.855624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3518307 93 - 27905053 UCAAGGGAU---AUUGCUGCUGGAGGAUUUCAUCACUCGGUUCGGUUAGGGCCGAAUGUUGUCUCUGCAGGAGCAUCUCGUAGUGCUGCGGCUCGU ....(((..---..((((.(((.(((((..(((...(((((((.....))))))))))..))).)).))).))))..(((((....)))))))).. ( -32.70) >DroPse_CAF1 1066 94 - 1 --AUGUGCUGCAGCUGCUGCUGCAGGAUGUCCUCGCUGGGUUCGGUGAGGGCCGAGUGCUGGCGCUGGAGCAGCAUUUCGUAGUGCUGCGGCUCGU --(((.(((((((((((((((.(((.....((((((((....))))))))((((.....)))).))).))))))).........)))))))).))) ( -49.40) >DroEre_CAF1 1084 93 - 1 UCAAGGGAU---ACUGCUGUUGGAGGAUGUCAUCACUCGGCUCGGUCAGGGCCGAGUGUUGUCUCUGGAGGAGCAUCUCAUAGUGCUGCGGCUCGU ....(((((---.((.((.(..((((....((.((((((((((.....)))))))))).))))))..))).)).)))))...(.((....)).).. ( -37.00) >DroYak_CAF1 1098 93 - 1 UCAGGGGAU---AUUGCUGUUGCAGGAUGUCUUCACUCGGUUCGGUUAGGGCCGAAUGUUGUCUCUGCAGGAGCAUCUCAUAGUGCUGCGGCUCGU ....((((.---..((((.((((((((((....((.(((((((.....))))))).)).)))).)))))).))))))))...(.((....)).).. ( -33.60) >DroAna_CAF1 1039 93 - 1 GCGUAGGAU---ACUGGGGCUGCAGGACAUCCUCACUGGGCUCCGUAAGAGCCGAAUGCUGGCGCUGGAGCAGCAUUUCGUAGUGUUGUGGCUCGU ...(((...---.)))((((..((((....)).((((((((((.....)))))((((((((.(......)))))))))..))))).))..)))).. ( -34.30) >DroPer_CAF1 1054 94 - 1 --AUGUGCUGCAGCUGCUGCUGCAGGAUGUCCUCGCUGGGCUCGGUGAGGGCCGAGUGCUGGCGCUGGAGCAGCAUUUCGUAGUGCUGCGGCUCGU --(((.(((((((((((((((.(((..((((..((((.(((((.....))))).))))..))))))).))))))).........)))))))).))) ( -50.40) >consensus UCAUGGGAU___ACUGCUGCUGCAGGAUGUCCUCACUCGGCUCGGUGAGGGCCGAAUGCUGGCGCUGGAGCAGCAUCUCGUAGUGCUGCGGCUCGU ..................(((((((.((..........(((((.....)))))(((((((.((......))))))).))...)).))))))).... (-25.86 = -24.17 + -1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:36 2006