Locus 1157

Sequence ID 3R_DroMel_CAF1
Location 3,490,522 – 3,490,619
Length 97
Max. P 0.687835
window1900

overview

Window 0

Location 3,490,522 – 3,490,619
Length 97
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 75.93
Mean single sequence MFE -24.50
Consensus MFE -17.29
Energy contribution -17.57
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.07
Structure conservation index 0.71
SVM decision value 0.32
SVM RNA-class probability 0.687835
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3490522 97 - 27905053
UGCGCGGCGCUGAAGUGCUCAAUAAACUCAGCGCGACAAACGGCGAAGUGCAAACUGAAUGCUGAAAACUGC---------------------CUCUGGAAACUGCAACUAGAAACUA
(((((((((((((.((.........)))))))))......(((((.(((....)))...))))).....)))---------------------....(....).)))........... ( -25.60)
>DroSec_CAF1 88054 97 - 1
UGCACGGCGCUGAAGUGCUCAAUAAACUCAGCGCGACAAACGGCGAAGUGCAAACUGAAAGCGGAAAACUGC---------------------CUCUGGAAACUGCAACUGGAAACUA
(((((..(((((..(((((..........)))))......)))))..)))))........((((....))))---------------------....(....).......(....).. ( -25.10)
>DroSim_CAF1 112099 97 - 1
UGCACGGCGCUGAAGUGCUCAAUAAACUCAGCGCGACAAACGGCGAAGUGCAAACUGAAAGCGGAAAACUGC---------------------CUCUGGAAACUGCAACUGGAAACUA
(((((..(((((..(((((..........)))))......)))))..)))))........((((....))))---------------------....(....).......(....).. ( -25.10)
>DroEre_CAF1 97266 98 - 1
UGCACGGCGCUGAAGUGCUCAAUAAACUCAGCGCGACAAACGGCGAAGUGCAAACUGAAAGCUGAAAACUGC--------CUCUGGAAACUGCAACUGGAAACUGC------------
((((.((((((((.((.........)))))))........((((..(((....)))....))))......))--------)...(....)))))...(....)...------------ ( -25.30)
>DroYak_CAF1 153901 118 - 1
UGCACGGCGCUGAAGUGCUCAAUAAACUCAGCGCGACAAACGGCGAAGUGCAAACUGGAAACUGAAAGCUGAAUGCUGAGAACUGAAAACUGCCUCUGGAAACUGCAACUGGAAACUA
(((((..(((((..(((((..........)))))......)))))..)))))..(..(...((...(((.....))).))..........(((....(....).))).)..)...... ( -28.20)
>DroAna_CAF1 82856 77 - 1
UGCGCGGCACUCAAGUGCUCAAUAAACUCAGCGCGACAAGCGGCAAAGUGCAAAACGAA-----------------------------------------AACUGCAACUGGAAACUC
((((((((((....)))))............(((.....))).....))))).......-----------------------------------------..........(....).. ( -17.70)
>consensus
UGCACGGCGCUGAAGUGCUCAAUAAACUCAGCGCGACAAACGGCGAAGUGCAAACUGAAAGCUGAAAACUGC_____________________CUCUGGAAACUGCAACUGGAAACUA
(((((..(((((..(((((..........)))))......)))))..))))).................................................................. (-17.29 = -17.57 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:27 2006