Locus 1153

Sequence ID 3R_DroMel_CAF1
Location 3,480,676 – 3,480,785
Length 109
Max. P 0.792822
window1893

overview

Window 3

Location 3,480,676 – 3,480,785
Length 109
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 81.26
Mean single sequence MFE -28.61
Consensus MFE -17.16
Energy contribution -16.33
Covariance contribution -0.83
Combinations/Pair 1.25
Mean z-score -2.34
Structure conservation index 0.60
SVM decision value 0.59
SVM RNA-class probability 0.792822
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3480676 109 + 27905053
AUAAGUGCAUUUCUUGG-GGCUUUUCUCGAGCAAUU-U--UUGUGUAAUUUAUUUGCACUUCACUUUGCGUUG--GCAGCCUCAAGUCAAAUACUUAACCACUU--UAAUUCCGUCU
.((((((.....(((((-((((....((((((((..-.--..((((((.....))))))......)))).)))--).))))))))).....)))))).......--........... ( -29.10)
>DroPse_CAF1 99139 112 + 1
UUGAGUGCAUUUCUUGG-GGCAUUUCUUGAGCAAUU-UUUUUGGCUAAUUUAUUUGCACUUCACUCUGCGUGGC-GCUGCCCCAAGUUAAGCACUUGACUCGUGAGGGACUCCGU--
(..(((((.(..(((((-((((...((...(((...-......((..........)).........)))..)).-..)))))))))..).)))))..)(((....))).......-- ( -36.47)
>DroEre_CAF1 87799 109 + 1
AUAAGUGCAUUUCUUGG-GGCAUUUCUAGAGCAAUU-U--UUGUCUAAUUUAUUUGCACUUCACUUUGCGCUG--GCAGCCUGAAGUCAAAUACUUAACCACUU--UAAUUCCGUCU
.((((((.....(((.(-(((....((((.((((..-.--..((.(((.....))).))......)))).)))--)..)))).))).....)))))).......--........... ( -22.00)
>DroYak_CAF1 139364 109 + 1
AUAAGUGCAUUUCUUGG-GGCAUUUCUCGAGCAAUU-U--UUGUCUAAUUUAUUUGCACUUCACUUUGCGCUG--GCAGCCUCAAGUCAAAUACUUAACCACUU--UAAUUCCGUUC
.((((((.....(((((-(((.........((((..-.--.............)))).........(((....--))))))))))).....)))))).......--........... ( -22.69)
>DroAna_CAF1 73666 105 + 1
UUAAGUGCAUUUCUUGGGGGCAUUUCUUGAGCUAUUUU--UUGGCUAAUUUAUUUGCACUUUACUCUACGCUGCAGCAGCCUCAAGUCAAAUACUUGAGC---U--UAGUCC-----
(((((((.....((((((((((.......(((((....--.)))))........)))............((....))..))))))).....)))))))..---.--......----- ( -24.96)
>DroPer_CAF1 94603 112 + 1
UUGAGUGCAUUUCUUGG-GGCAUUUCUUGAGCAAUU-UUUUUGGCUAAUUUAUUUGCACUUCACUCUGCGUGGC-GCUGCCCCAAGUUAAGCACUUGACUCGUGAGGGACUCCGU--
(..(((((.(..(((((-((((...((...(((...-......((..........)).........)))..)).-..)))))))))..).)))))..)(((....))).......-- ( -36.47)
>consensus
AUAAGUGCAUUUCUUGG_GGCAUUUCUUGAGCAAUU_U__UUGGCUAAUUUAUUUGCACUUCACUCUGCGCUG__GCAGCCUCAAGUCAAAUACUUAACCACUU__UAAUUCCGU__
.((((((.....(((((.(((.........((((...................))))............((....)).)))))))).....)))))).................... (-17.16 = -16.33 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:21 2006