Locus 1152

Sequence ID 3R_DroMel_CAF1
Location 3,461,828 – 3,461,919
Length 91
Max. P 0.506367
window1892

overview

Window 2

Location 3,461,828 – 3,461,919
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 97.58
Mean single sequence MFE -23.13
Consensus MFE -20.87
Energy contribution -21.37
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.06
Structure conservation index 0.90
SVM decision value -0.05
SVM RNA-class probability 0.506367
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3461828 91 - 27905053
AUGGCAGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCAAGAGUUUGAUAUAUUUGCGGCUGGCGAAUGCCAAAACUACACGCAAUCG
..(.(((((.(((((.(((..((..(((((((((....)))))).))))).)))))))).))))).)((.(((...........))).)). ( -23.90)
>DroSec_CAF1 60726 91 - 1
AUGGCAGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCUAGAGUUUGAUAUAUUUGCGGCUGGCGAAUGCCAAAACUACACGCAAUCG
..(.(((((.(((((..(..((.((((((.........)))))).))..)....))))).))))).)((.(((...........))).)). ( -24.30)
>DroSim_CAF1 75222 91 - 1
AUGGCAGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCUAGAGUUUGAUAUAUUUGCGGCUGGCGAAUGCCAAAACUACACGCAAUCG
..(.(((((.(((((..(..((.((((((.........)))))).))..)....))))).))))).)((.(((...........))).)). ( -24.30)
>DroEre_CAF1 69903 91 - 1
AUGGCAGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCAAGAGUUUGAUAUAUUUGCGGCUGGCGAAUGCCAAAACUACACGCAAUCG
..(.(((((.(((((.(((..((..(((((((((....)))))).))))).)))))))).))))).)((.(((...........))).)). ( -23.90)
>DroYak_CAF1 83220 91 - 1
AUAGCAGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCAAGAGUUUGAUAUAUAUGCGGCUUGCGAAUGCCAAAACUACACGCAAUCG
...((((((......((((...((..((((((((....)))))).).)..))...)))).))).)))((.(((...........))).)). ( -19.60)
>DroAna_CAF1 57800 91 - 1
AUGGCUGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCAAGAGUUUGAUAUAUUUGCGGCUGGCGAAUGCCAAAACUACACGCAAUCA
...((((((((.....)))).))(((((((((((....))))))..........((((((.....)))))))))))........))..... ( -22.80)
>consensus
AUGGCAGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCAAGAGUUUGAUAUAUUUGCGGCUGGCGAAUGCCAAAACUACACGCAAUCG
...((.(((((.....)))).).(((((((((((....))))))..........((((((.....)))))))))))........))..... (-20.87 = -21.37 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:20 2006