| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 665,338 – 665,430 |
| Length | 92 |
| Max. P | 0.999817 |
| Location | 665,338 – 665,430 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 77.27 |
| Mean single sequence MFE | -22.63 |
| Consensus MFE | -19.31 |
| Energy contribution | -19.53 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.27 |
| Structure conservation index | 0.85 |
| SVM decision value | 4.15 |
| SVM RNA-class probability | 0.999817 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 665338 92 + 27905053 AAUCCGCCAGUGGAUUCAUAUAUCCAUCUUCGU--GAGAGUUCUGUUAACCGGUAUCUGAUCGUUCAGAUAUCGACUAUCAUCGUCUCUCUUAA ....((...((((((......))))))...)).--(((((...((.((..((((((((((....))))))))))..)).))....))))).... ( -26.70) >DroSec_CAF1 84622 76 + 1 A-----------------UCCAUCCAUCUUCGUUUGAGAGUUCUGUUAACUGGUAUCUGAUAGUCCAGAUAUCGACUACAGUGGUCUCUCCUA- .-----------------.................(((((..((((....(((((((((......)))))))))...))))....)))))...- ( -20.60) >DroSim_CAF1 82222 76 + 1 A-----------------UCCAUCCAUCUUCGUUUGAGAGUUCUGUUAACUGGUAUCUGAUAGUCCAGAUAUCGACUACAGUGGUCUCUCCUA- .-----------------.................(((((..((((....(((((((((......)))))))))...))))....)))))...- ( -20.60) >consensus A_________________UCCAUCCAUCUUCGUUUGAGAGUUCUGUUAACUGGUAUCUGAUAGUCCAGAUAUCGACUACAGUGGUCUCUCCUA_ ...................................(((((..((((....(((((((((......)))))))))...))))....))))).... (-19.31 = -19.53 + 0.23)
| Location | 665,338 – 665,430 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 77.27 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -12.51 |
| Energy contribution | -12.73 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 665338 92 - 27905053 UUAAGAGAGACGAUGAUAGUCGAUAUCUGAACGAUCAGAUACCGGUUAACAGAACUCUC--ACGAAGAUGGAUAUAUGAAUCCACUGGCGGAUU ....(((((....((.((..((.(((((((....))))))).))..)).))...)))))--.((.((.(((((......)))))))..)).... ( -27.90) >DroSec_CAF1 84622 76 - 1 -UAGGAGAGACCACUGUAGUCGAUAUCUGGACUAUCAGAUACCAGUUAACAGAACUCUCAAACGAAGAUGGAUGGA-----------------U -...(((((....((((((..(.((((((......)))))).)..)).))))..))))).................-----------------. ( -15.90) >DroSim_CAF1 82222 76 - 1 -UAGGAGAGACCACUGUAGUCGAUAUCUGGACUAUCAGAUACCAGUUAACAGAACUCUCAAACGAAGAUGGAUGGA-----------------U -...(((((....((((((..(.((((((......)))))).)..)).))))..))))).................-----------------. ( -15.90) >consensus _UAGGAGAGACCACUGUAGUCGAUAUCUGGACUAUCAGAUACCAGUUAACAGAACUCUCAAACGAAGAUGGAUGGA_________________U ....(((((....((((((..(.(((((((....))))))).)..)).))))..)))))................................... (-12.51 = -12.73 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:33 2006