Locus 1136

Sequence ID 3R_DroMel_CAF1
Location 3,398,866 – 3,398,986
Length 120
Max. P 0.925955
window1866

overview

Window 6

Location 3,398,866 – 3,398,986
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -36.66
Consensus MFE -30.92
Energy contribution -31.11
Covariance contribution 0.19
Combinations/Pair 1.08
Mean z-score -2.31
Structure conservation index 0.84
SVM decision value 1.17
SVM RNA-class probability 0.925955
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3398866 120 - 27905053
CAACAACAUACCCAGCGAUGCCUCCGUGAAGCCCCUUAAUCCUCCGUACAUUUCACGGGCUGCGAACGCGGCGGCCAUGGCAAACUUUACGAUUUUUACCAACCAGGUCUUCUCGCUGCU
............((((((((((.((((((((...................))))))))(((((....)))))......))))...............(((.....)))....)))))).. ( -32.51)
>DroSim_CAF1 7820 120 - 1
CAACAACAUACCCAGCGAUGCCUCCGUGAAACCCCUUAAUCCGCCGUACAUUUCACGGGCUGCGAACGCGGCAGCCAUGGCAAACUUUACGAUUUUCACCAACCAGGUCUUCUCGCUGCU
............((((((((((..(((((((...................)))))))((((((.......))))))..))))...............(((.....)))....)))))).. ( -33.11)
>DroEre_CAF1 6154 120 - 1
CAACAACAUAGCCAGCGACGCCUCCGUGAAGCCGCUCAAUCCGCCGUACAUUUCACGGGCGGCGAAUGCGGCGGCCAUGGCCAACUUUACGAUUUUCACCAACCAGGUGUUCUCGCUGCU
.........(((.((((((((((..((((((((((.....(((((((.......)).))))).....)))))(((....)))............))))).....)))))...)))))))) ( -44.70)
>DroYak_CAF1 11520 120 - 1
CAACAACAUAGCCAGCGAUGCCUCCGUGAAGCCUCUUAAUCCGCCUUACAUUUCACGGGCUGCCAAUGCGGCGGCCAUGGCAAACUUUACGAUUUUCACCAACCAGGUUUUCUCGCUGCU
.........(((.(((((((((..(((((((...................)))))))(((((((.....)))))))..))))...............(((.....)))....)))))))) ( -36.31)
>consensus
CAACAACAUACCCAGCGAUGCCUCCGUGAAGCCCCUUAAUCCGCCGUACAUUUCACGGGCUGCGAACGCGGCGGCCAUGGCAAACUUUACGAUUUUCACCAACCAGGUCUUCUCGCUGCU
............((((((((((..(((((((...................)))))))((((((.......))))))..))))...............(((.....)))....)))))).. (-30.92 = -31.11 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:56 2006