Locus 1134

Sequence ID 3R_DroMel_CAF1
Location 3,398,078 – 3,398,198
Length 120
Max. P 0.600674
window1864

overview

Window 4

Location 3,398,078 – 3,398,198
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.94
Mean single sequence MFE -41.70
Consensus MFE -38.91
Energy contribution -39.10
Covariance contribution 0.19
Combinations/Pair 1.05
Mean z-score -1.60
Structure conservation index 0.93
SVM decision value 0.14
SVM RNA-class probability 0.600674
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3398078 120 - 27905053
AACAUGUGGUCACCCAUCAGCAACACUUGCAGAAUCAUCAUAAUCAAAGCAUGACCACUGUGCUGACCACGGCCGGUGGACUGGUGGUGCCCACGCCACCCACUGUGCCGGUAAUUGUGG
..(((((((((........(((.....))).................(((((.......)))))))))))(((((((((....((((((....)))))))))))).))).......))). ( -41.20)
>DroSim_CAF1 7035 120 - 1
AACAUGUGGUCACCCAUCAGCAACACUUGCAGAAUCAUCAUAAUCAAAGCAUGACCACUGUGCUGACCACGGCCGGUGGACUGGUCGUGCCCACGCCACCCACUGUGCCGGUGAUUGUGG
.....(..((((((..(((((.......((((..(((((.........).))))...)))))))))....(((((((((..(((.(((....)))))).)))))).)))))))))..).. ( -40.51)
>DroEre_CAF1 5357 120 - 1
AACAUGUGGUCACCCAUCAGCAACACUUGCAGAAUCAUCAUAAUCAAAGCAUGACCACUGUGCUGACCACGACCGGUGGAUUGGUGGUGCCCGCGCCACCCACUGUGCCGGUGAUUGUGG
.(((.(((((((..(....(((.....))).((....)).........)..)))))))))).....((((((((((((.(..(((((((....)))))))...).)))))))...))))) ( -41.90)
>DroYak_CAF1 10726 120 - 1
AACAUGUGGUCACCCAUCAGCAGCACUUGCAGAAUCAUCAUAAUCAAAGCAUGACCACUGUGCUGACCACGGCCGGUGGAUUGGUGGUGCCCACGCCACCCACUGUGCCGGGGAUUGUGG
.....((((....))))..((((...))))........(((((((..(((((.......)))))..((.((((((((((....((((((....)))))))))))).))))))))))))). ( -43.20)
>consensus
AACAUGUGGUCACCCAUCAGCAACACUUGCAGAAUCAUCAUAAUCAAAGCAUGACCACUGUGCUGACCACGGCCGGUGGACUGGUGGUGCCCACGCCACCCACUGUGCCGGUGAUUGUGG
.(((.(((((((..(....((((...)))).((....)).........)..)))))))))).....((((((((((((.(..(((((((....)))))))...).)))))))...))))) (-38.91 = -39.10 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:54 2006