| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 664,151 – 664,246 |
| Length | 95 |
| Max. P | 0.841036 |
| Location | 664,151 – 664,246 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 59.77 |
| Mean single sequence MFE | -24.04 |
| Consensus MFE | -14.02 |
| Energy contribution | -14.74 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 664151 95 + 27905053 UUUGAAAGUCUAGGAGCUCGAUUAGCAU----------UA-CUCGUUAAAGC---------AUUACUUGUAGGGUAUAUAAGCUUCGGCUUGCCAAAGCUAGCUGUAUUCUUGUU ..........((((((..((.(((((..----------((-(((....(((.---------....)))...)))))..(((((....))))).....))))).))..)))))).. ( -22.00) >DroSec_CAF1 83428 85 + 1 --GG---------GAGCUCGAUUAGCAU----------UUUCUCUUUUAAAC---------AUUUCUGGCAGGGUAUAGCAGCUUCGGCUUGCCGAGGCUGGAUGUAUUCUUGUU --((---------(((((.....)))..----------..))))........---------......(((((((((((.(((((((((....)))))))))..)))).))))))) ( -26.90) >DroSim_CAF1 81003 92 + 1 UUUCAAAUUU---GUUUCCGACUAACGU----------GA-AUCUAAAAGUC---------UUUUCUGGCAGGGUAUAGCAGCUUCGGCUUGCCGAGGCUAGCUGUAUUCUUGUU .((((.....---(((...))).....)----------))-).......(((---------......)))((((((((((((((((((....)))))))).)))))))))).... ( -30.10) >DroEre_CAF1 80577 111 + 1 UUUGAAAUUU---AUUACCGAGUAUCUGGAAGUGGAGGAA-CUCGUUUAAGCAAAUACAUAACUAUUGCAAGGGUACAUAAGCUUCGGCUUGCCGAAGCUUGCUUUUUUCUUGUU ...((((...---..((((((((.(((........))).)-)))......((((...........))))...))))..((((((((((....))))))))))....))))..... ( -28.50) >DroYak_CAF1 90502 88 + 1 AAUGAACUUG---AUUU------------------------CUCGUUUAGACAUACACAUAAUUACUGCAAGGGUAUAUAAGCGUCGGCUUGUCGAAGCUAGCAUUAUUUUUAUU ((((((..((---((..------------------------((.((((.(((...........((((.....))))...((((....))))))).)))).)).))))..)))))) ( -12.70) >consensus UUUGAAAUUU___GUUCCCGAUUAGCAU__________UA_CUCGUUUAAAC_________AUUACUGGAAGGGUAUAUAAGCUUCGGCUUGCCGAAGCUAGCUGUAUUCUUGUU ......................................................................((((((((..((((((((....))))))))...)))))))).... (-14.02 = -14.74 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:31 2006