| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,393,046 – 3,393,158 |
| Length | 112 |
| Max. P | 0.981569 |
| Location | 3,393,046 – 3,393,158 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.47 |
| Mean single sequence MFE | -46.48 |
| Consensus MFE | -30.11 |
| Energy contribution | -33.61 |
| Covariance contribution | 3.50 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3393046 112 - 27905053 -ACCCGAUCCACCUCAGUAUCCACCCUGCUCAUCCGUCCCAUCGAGGGUCACACUCGAUGGCUGUCAAUGAUAGCUCCUUCCCAAGCAGGGAG-------GAGGAGAAUCGGAGGGCACC -.(((..(((..(((....(((.(((((((.........(((((((.......)))))))((((((...)))))).........))))))).)-------)).)))....)))))).... ( -42.90) >DroSim_CAF1 1994 113 - 1 -ACCCGAUCCACCUCUGCAUCCACCCUGCUCAUCCGUCCCAUCGAGGGUCACACUCGAUGGCUGUCAAUGAUAGCUCCUUCCCGUACAUGAAG------AGGGGGGAGUCGGAGGGCACC -..........((((((..(((.((((..((((.((...(((((((.......)))))))((((((...)))))).......))...))))..------)))).)))..))))))..... ( -40.70) >DroEre_CAF1 215 103 - 1 AACCCGA----------------CCCUCCUCAUCGCCUCCAUCGAGGGUCACACUCGAUGGCUGUCAAUGAUAGCUUCGUUCCGAGCAGGGGGGGGGGGGGGGGGGAGUCGGAG-GCACC ...((((----------------((((((((..(.(((((((((((.......))))))(((((((...))))))).....((.....))))))).)..))))))).)))))..-..... ( -49.40) >DroYak_CAF1 5656 116 - 1 -ACCCGAUCCACCUCUGUAUCCUCCCUUCUCAUCCGUCCCAUCGAGGGUCACACUCGAUGGCUGUCAAUGAUAGCUUCGUCCCGAGCGGUGAG--GCAGGGAGGGGAGUCGGAG-GCACC -..........((((((..(((((((((((((.(((..((((((((.......)))))))((((((...))))))........)..)))))))--).))))))))....)))))-).... ( -52.90) >consensus _ACCCGAUCCACCUCUGUAUCCACCCUGCUCAUCCGUCCCAUCGAGGGUCACACUCGAUGGCUGUCAAUGAUAGCUCCGUCCCGAGCAGGGAG______GGAGGGGAGUCGGAG_GCACC ...(((((.(.(((((.......((((((((........(((((((.......)))))))((((((...))))))........))))))))........))))).).)))))........ (-30.11 = -33.61 + 3.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:43 2006