| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,391,165 – 3,391,325 |
| Length | 160 |
| Max. P | 0.924431 |
| Location | 3,391,165 – 3,391,285 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -33.20 |
| Consensus MFE | -33.64 |
| Energy contribution | -33.20 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.98 |
| Structure conservation index | 1.01 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3391165 120 - 27905053 UUCGCCAAAUGCCUUUGUUGCUAGAAAAGCGCCGUCGAAAAGAUGGUGAUGAAGACAGCGAAGAAUGCCGGCGAAAUUAAAGUGAAAUUGAAAAAGUUUUAUGAGCUUUUCCUCCAUGCA ((((((..((..((((((((((.......(((((((.....)))))))....)).)))))))).))...))))))......((((((((.....))))))))..((...........)). ( -32.90) >DroSim_CAF1 26 120 - 1 UUCGCCAAAUGCCUUUGUUGCUAGAAAAGCGCCGUCGAAAAGAUGGUGAUGAAGACAGCGAAGAAUGCCGGCGAAAUUAAAGUGAAAUUGAAAAAGUUUUAUGAGCUUUUCCUCCAUGCA ((((((..((..((((((((((.......(((((((.....)))))))....)).)))))))).))...))))))......((((((((.....))))))))..((...........)). ( -32.90) >DroYak_CAF1 3721 120 - 1 UUCGCCAAAUGCCUUUGCUGCUAGAAAAACGCCGUCGAAAAGAUGGUGAUGAAGACAGCGGAGAAUGCCGGCGAAAUUAAAGUGAAAUUGAAAAAGUUUUAUGAGCUUUUCCUCCAUGCA ((((((..((..((((((((((.......(((((((.....)))))))....)).)))))))).))...))))))......((((((((.....))))))))..((...........)). ( -33.80) >consensus UUCGCCAAAUGCCUUUGUUGCUAGAAAAGCGCCGUCGAAAAGAUGGUGAUGAAGACAGCGAAGAAUGCCGGCGAAAUUAAAGUGAAAUUGAAAAAGUUUUAUGAGCUUUUCCUCCAUGCA ((((((..((..((((((((((.......(((((((.....)))))))....)).)))))))).))...))))))......((((((((.....))))))))..((...........)). (-33.64 = -33.20 + -0.44)
| Location | 3,391,205 – 3,391,325 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -29.84 |
| Energy contribution | -29.40 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.61 |
| Structure conservation index | 1.01 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773460 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3391205 120 - 27905053 GCAUAUAAUUGAAUUUUUACACAACUAAAGAAGAGGCCUAUUCGCCAAAUGCCUUUGUUGCUAGAAAAGCGCCGUCGAAAAGAUGGUGAUGAAGACAGCGAAGAAUGCCGGCGAAAUUAA .............((((((......)))))).........((((((..((..((((((((((.......(((((((.....)))))))....)).)))))))).))...))))))..... ( -29.10) >DroSim_CAF1 66 120 - 1 GCAUAUAAUUGAAUUUUUACACAACUAAAGAAGAGGCCUAUUCGCCAAAUGCCUUUGUUGCUAGAAAAGCGCCGUCGAAAAGAUGGUGAUGAAGACAGCGAAGAAUGCCGGCGAAAUUAA .............((((((......)))))).........((((((..((..((((((((((.......(((((((.....)))))))....)).)))))))).))...))))))..... ( -29.10) >DroYak_CAF1 3761 120 - 1 GCAUAUAAUUGAAUUUUUACACAACUAAAGAAGAGGCCUAUUCGCCAAAUGCCUUUGCUGCUAGAAAAACGCCGUCGAAAAGAUGGUGAUGAAGACAGCGGAGAAUGCCGGCGAAAUUAA .............((((((......)))))).........((((((..((..((((((((((.......(((((((.....)))))))....)).)))))))).))...))))))..... ( -30.00) >consensus GCAUAUAAUUGAAUUUUUACACAACUAAAGAAGAGGCCUAUUCGCCAAAUGCCUUUGUUGCUAGAAAAGCGCCGUCGAAAAGAUGGUGAUGAAGACAGCGAAGAAUGCCGGCGAAAUUAA .............((((((......)))))).........((((((..((..((((((((((.......(((((((.....)))))))....)).)))))))).))...))))))..... (-29.84 = -29.40 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:38 2006