| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,383,782 – 3,383,894 |
| Length | 112 |
| Max. P | 0.500000 |
| Location | 3,383,782 – 3,383,894 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.66 |
| Mean single sequence MFE | -25.32 |
| Consensus MFE | -10.42 |
| Energy contribution | -11.42 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.41 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3383782 112 - 27905053 AAUUUUCAUUGACUCUGGUAUCCAUUAUUGCGGUUAUGGCCGCAGUUCCCAGUUGGCUCAUAAUCG-CCA-------GCAUCUCCCACUUCCCCCUUACCCAAUAUAACUCGAACCGAAA ................((((......((((((((....)))))))).....((((((........)-)))-------)).................)))).................... ( -23.40) >DroSec_CAF1 12156 102 - 1 AAUUUUCAUUGACUCUGGUAUCCAUUAUUUCGGUUAUGGCCGCAGUUCCCAGUUGGCUCAUAUUCGGCCA-------GCACCUCCCAC-----------AUAAUAUAACUCGAACCGAAA ...........................((((((((.(((.........)))(((((((.......)))))-------)).........-----------.............)))))))) ( -19.20) >DroAna_CAF1 20574 98 - 1 AAUUUUCAUUGACUCGGAUAUUCAUUAUUGCGGUUAUGGCCGCAGUUCCCAAUUGGGUCAUAAUCGGGGAAACGGAAUCAUAACGCAC-----------CGAGUAUAU-----------G ...........((((((.............(((((((((((.((((.....))))))))))))))).(....)..............)-----------)))))....-----------. ( -29.30) >DroSim_CAF1 12991 102 - 1 AAUUUUCAUUGACUCUGGUAUCCAUUAUUGCGGUUAUGGCCGCAGUUCCCAGUUGGCUCAUAUUCGGCCA-------GCACCUCCCAC-----------CCAAUAUAACUCGAACCGAAA ...............((((.((....((((((((....)))))))).....(((((((.......)))))-------)).........-----------............))))))... ( -23.90) >DroEre_CAF1 12367 101 - 1 AAUUUUCAUUGACUCUGGUAUCCAUUAUUGCGGUCAUAGCCGCAGCUCCCAGUUGGCUCAUAAUCGG-GA-------GCACCUCCCAC-----------CCAAUAAAACUGGAGCCGUAA ..........(.(((..((.........((((((....))))))((((((.((((.....)))).))-))-------)).........-----------........))..))).).... ( -30.80) >consensus AAUUUUCAUUGACUCUGGUAUCCAUUAUUGCGGUUAUGGCCGCAGUUCCCAGUUGGCUCAUAAUCGGCCA_______GCACCUCCCAC___________CCAAUAUAACUCGAACCGAAA .........(((((((((........((((((((....))))))))..))))..)).)))............................................................ (-10.42 = -11.42 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:33 2006