Locus 112

Sequence ID 3R_DroMel_CAF1
Location 663,040 – 663,136
Length 96
Max. P 0.560165
window184

overview

Window 4

Location 663,040 – 663,136
Length 96
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 85.68
Mean single sequence MFE -29.70
Consensus MFE -20.96
Energy contribution -23.50
Covariance contribution 2.54
Combinations/Pair 1.04
Mean z-score -1.68
Structure conservation index 0.71
SVM decision value 0.05
SVM RNA-class probability 0.560165
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 663040 96 + 27905053
UGUAUACCCUUGUGU----AUAUGUGCUAUACAUACAUAUGGGGGCAGGUGGAGGAGGAGCAGUUUUGGCCACCUUUGCGUGUCCAUUGGCUAUAACUCA
..((((.((.(((((----(((.....)))))))).......(((((.(..((((.((..(......).)).))))..).)))))...)).))))..... ( -29.50)
>DroSec_CAF1 82311 96 + 1
CAUACACCCUUGUGUGUACAUAUGUGCC----AUACAUAUGGGGGCAGGUGGAGGAGGAGCAGCUUUGGCCACCUUUGCGUGUCCAUUGGCUAUAACUCA
.((((((....)))))).((((((((..----.)))))))).(((((.(..((((.((..(......).)).))))..).)))))............... ( -32.30)
>DroSim_CAF1 79886 96 + 1
CAUACACCCUUGUGUGUACAUAUGUGCC----AUACAUAUGGGGGCAGGUGGAGGAGGAGCAGCUUUGGCCACCUUUGCGUGUCCAUUGGCUAUAACUCA
.((((((....)))))).((((((((..----.)))))))).(((((.(..((((.((..(......).)).))))..).)))))............... ( -32.30)
>DroEre_CAF1 79548 83 + 1
UGUAUACCCUUGUGU--ACAUAC--A---------CAUAU----GCAGGUGGAGAAGGAGCAGUUUUGGCCACCUUUGCGUGUCCAUUGGCUAUAACUCA
..((((.((..((((--....))--)---------)((((----((((((((..((((.....))))..)))))..))))))).....)).))))..... ( -20.90)
>DroYak_CAF1 89525 88 + 1
UGUAUACCCUUGUGU--ACAUAU--GC--------CAUAUGGGGGCAGGUGAAGGAGGAGCAGUUUUGGCCACCUUUGCGUGUCCAUUGGCAAUAACUCA
(((((((....))))--)))..(--((--------((.....(((((.(..((((.((..(......).)).))))..).)))))..)))))........ ( -33.50)
>consensus
UGUAUACCCUUGUGU__ACAUAUGUGC_____AUACAUAUGGGGGCAGGUGGAGGAGGAGCAGUUUUGGCCACCUUUGCGUGUCCAUUGGCUAUAACUCA
..((((.((.........((((((((.......)))))))).(((((.(..((((.((..(......).)).))))..).)))))...)).))))..... (-20.96 = -23.50 +   2.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:30 2006