Locus 1113

Sequence ID 3R_DroMel_CAF1
Location 3,363,185 – 3,363,291
Length 106
Max. P 0.905258
window1821

overview

Window 1

Location 3,363,185 – 3,363,291
Length 106
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 80.82
Mean single sequence MFE -42.45
Consensus MFE -32.43
Energy contribution -31.88
Covariance contribution -0.54
Combinations/Pair 1.49
Mean z-score -2.16
Structure conservation index 0.76
SVM decision value 1.04
SVM RNA-class probability 0.905258
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3363185 106 + 27905053
CGCUGGAGGUCAAUAGGCUCGGCAAGGAGCACUGCAUUGGGCGUGGAGUAGCUUUCAAUGCUGGGCUUGAAGGGCAUAUUGUGACCCUGUCUCUUCUCCAGUGGAG
(((((((((....(((((((((((.((((((((.(((.....))).))).)))))...))))))))))).(((((((...))).))))......)))))))))... ( -45.60)
>DroPse_CAF1 42081 106 + 1
CGCUGCAGGACAAUGGGUUCCGACAACAGCACCGCCUGGGGCGUCACAUAACUCUCCACUGAUGGCACAAAGGGCAUCAUACGACCCAGCUCUUUUUCUAGGGGCG
.((((..(((........))).....))))...((((((((.((......)).))))).....))).....((((.......).))).((((((.....)))))). ( -28.00)
>DroSec_CAF1 56725 106 + 1
UGCUGGAGAUCAACAGGCUCGGCAAGGAGCACUGCAUUGGGCGUGGAGUAGCUUUCAAUGCUGGGCUUGAAGGGCAUAUUGUGACCCUGUCUCUUCUCCAGUGGAG
.((((((((....(((((((((((.((((((((.(((.....))).))).)))))...))))))))))).(((((((...))).))))......)))))))).... ( -46.30)
>DroSim_CAF1 51604 106 + 1
CGCUGGAGAUCAACAGGCUCGGCAAGGAGCACUGCAUUCGGCGUGGAGUAGCUUUCAAUGCUGGGCUUGAAGGGCAUAUUGUGACCCUGUCUCUUCUCCAGCGGAG
(((((((((....(((((((((((.((((((((.(((.....))).))).)))))...))))))))))).(((((((...))).))))......)))))))))... ( -50.50)
>DroEre_CAF1 54523 106 + 1
CGUUGGAGGUCAACGGGCUCGGCAAGGAGCACUGCAUUGGGAGUGGCGUAGCUUUCGAUGCUGGGUCUGAAGGGCAUGCUGUGACCCUUGCUCUUUUCCAGUGGAG
(((((.....))))).(((.((.((((((((..((((((..(((......)))..)))))).(((((...((......))..))))).)))))))).))))).... ( -42.70)
>DroYak_CAF1 75189 106 + 1
CGUUGGAGGUCAACUGGCUCGGCAAGGAGCACUGCAUUGGGAGUGGCGUAGCUUUCAAUGCUGGGUUUGAAGGACAUGUUCUGACCCUGUCUCUUCUCCAGCGGAG
(((((((((((....)))......(((((.((.((((((..(((......)))..)))))).(((((...((((....))))))))).)))))))))))))))... ( -41.60)
>consensus
CGCUGGAGGUCAACAGGCUCGGCAAGGAGCACUGCAUUGGGCGUGGAGUAGCUUUCAAUGCUGGGCUUGAAGGGCAUAUUGUGACCCUGUCUCUUCUCCAGUGGAG
(((((((((....(((((((((((..(((..((((.((......)).))))..)))..))))))))))).((((((.....)).))))......)))))))))... (-32.43 = -31.88 +  -0.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:13 2006