Locus 111

Sequence ID 3R_DroMel_CAF1
Location 660,492 – 660,585
Length 93
Max. P 0.682124
window183

overview

Window 3

Location 660,492 – 660,585
Length 93
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 81.44
Mean single sequence MFE -17.58
Consensus MFE -12.50
Energy contribution -11.70
Covariance contribution -0.80
Combinations/Pair 1.32
Mean z-score -1.57
Structure conservation index 0.71
SVM decision value 0.31
SVM RNA-class probability 0.682124
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 660492 93 + 27905053
UGAUCCAGCAUGACUUUGCUUUCAAAACAUAUUUGCAACGGCGAAAAGCCGAC--AACAAUAGAGUAACACUCCCGUCAUAAAGGAAAAGUAUAA
...(((...(((((.((((...............))))((((.....))))..--.......(((.....)))..)))))...)))......... ( -18.66)
>DroPse_CAF1 83234 83 + 1
UGAUCCGGUAUGACUUUGCUUUCAAAACAUAUUUGUAACGGCAAAAAGCCGACACAACAAAAGCGUAAGACCC------------AAAGAUGGCA
......(((...((...(((((....(((....)))..((((.....))))........)))))))...))).------------.......... ( -13.90)
>DroSim_CAF1 77312 93 + 1
UGAUCCAGCAUGACUUUGCUUUCAAAACAUAUUUGCAACGGCGAAAAGCCGAC--AACAAUAGAGUAACACUCACGGCAUAAAGCAGAAAUAUAA
(((...((((......)))).))).......(((((..((((.....))))..--.......(((.....)))..........)))))....... ( -20.00)
>DroEre_CAF1 76969 92 + 1
UGAUCCAGCAUGACUUUGCUUUCAAAACAUAUUUGCAACGGCGAAAAGCCGAC--AACAAUAGAGUAACACUCCCGGCACAGGGG-AAAAUAUAA
(((...((((......)))).)))....((((((....((((.....))))..--................((((......))))-.)))))).. ( -19.00)
>DroAna_CAF1 82418 93 + 1
UGAUCCAGCAUGACUUUGCUUUCAAAACAUAUUUGUAACGGCGAAAAGCCGAC--AACAAAAGGGUAACACUCUCGGAAAAAAUAAAAAAUGGAA
...(((((((......)))((((........(((((..((((.....))))..--.)))))((((.....))))..))))..........)))). ( -20.00)
>DroPer_CAF1 84232 83 + 1
UGAUCCGGUAUGACUUUGCUUUCAAAACAUAUUUGUAACGGCAAAAAGCCGACACAACAAAAGCGUAAGACCC------------AAAGAUGGCA
......(((...((...(((((....(((....)))..((((.....))))........)))))))...))).------------.......... ( -13.90)
>consensus
UGAUCCAGCAUGACUUUGCUUUCAAAACAUAUUUGCAACGGCGAAAAGCCGAC__AACAAAAGAGUAACACUC_CGGCA_AAAG_AAAAAUAGAA
(((...((((......)))).))).....(((((....((((.....))))...........(((.....)))..............)))))... (-12.50 = -11.70 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:29 2006