Locus 1109

Sequence ID 3R_DroMel_CAF1
Location 3,356,010 – 3,356,129
Length 119
Max. P 0.537251
window1814

overview

Window 4

Location 3,356,010 – 3,356,129
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.22
Mean single sequence MFE -34.94
Consensus MFE -22.84
Energy contribution -23.24
Covariance contribution 0.40
Combinations/Pair 1.17
Mean z-score -2.24
Structure conservation index 0.65
SVM decision value 0.01
SVM RNA-class probability 0.537251
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3356010 119 - 27905053
UGGUAUAUUUUUAAG-GCAGUAAUUUCCGAGAGCAGUACAGUACUGCGCAGUUAUCGAUCCAUUUUGCGCACUUAUCGAUUAAUUGCGCGCGAAAUGAGUAUGCUUUGAAAUAAUCCACA
(((.....(((((((-(((...(((((((...((((((...))))))((((((((((((...............))))).))))))).)).))))).....))))))))))....))).. ( -34.96)
>DroSec_CAF1 49439 119 - 1
UAGUAUAUUUUUAAG-GCAGUAUUUUCCGAGUAAAGUACAGUACUGCGCAGUUAUCGAUCCACUUUGCGCACUUAUCGAUUAAUUGCGCGCGAAGCGAGUAUGCUUUGAAAUAUUGUACA
..(((((.(((((((-((.(((((((......))))))).(((((((((((((((((((...............))))).)))))))))((...)).))))))))))))))...))))). ( -36.16)
>DroSim_CAF1 43741 119 - 1
UAGUAUAUUUUUAAG-GCAGUAUUUUCCGAGUAAAGUACAGUACUGCGCAGUUAUCGAUCCACUUUGCGCACUUAUCGAUUAAUUGCGCGCGAAACGAGUAUGCUUUGAAAUAUUGCACA
..(((...(((((((-((.(((((((......))))))).(((((((((((((((((((...............))))).))))))))).((...))))))))))))))))...)))... ( -32.76)
>DroEre_CAF1 42747 120 - 1
UAGUAUAUUUUUGUGUGCAGUAUGUUGUGAGUGCAGUACAGUGCUGCGCAGUUAUCGAUCCACUUUGCGCACUUAUCGAUAGGUUGCGCGCGAAACUAGCAUGCUUUGAAAAAACGGACA
.(((((..((((((((((((..((((((((((((.(((.((((...((.......))...)))).)))))))))).)))))..)))))))))))).....)))))............... ( -37.40)
>DroYak_CAF1 63867 120 - 1
UAGUAUAUUUUUGGGUGCAGUAUAUUGUGAGUGCAGUACAGUACUGCGCAGUUAUCGAUCCACUUUGCGCACUUAUCGAUUGGUUGCGCGCGAAACUAGCAUGCUUUGAAAUAGUGCAUG
..(((((((((.(.(((((((.....(((.((((((((...)))))))).(....)....)))(((((((.(..(((....))).).)))))))))).)))).)...))))).))))... ( -33.40)
>consensus
UAGUAUAUUUUUAAG_GCAGUAUUUUCCGAGUGCAGUACAGUACUGCGCAGUUAUCGAUCCACUUUGCGCACUUAUCGAUUAAUUGCGCGCGAAACGAGUAUGCUUUGAAAUAAUGCACA
.(((((((((......((...........(((((......)))))((((((((((((((...............)))))).)))))))))).....)))))))))............... (-22.84 = -23.24 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:06 2006