| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,352,517 – 3,352,613 |
| Length | 96 |
| Max. P | 0.978870 |
| Location | 3,352,517 – 3,352,613 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 95.49 |
| Mean single sequence MFE | -29.63 |
| Consensus MFE | -26.68 |
| Energy contribution | -27.23 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -4.02 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.968012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3352517 96 + 27905053 AAACAUUUUAUUUAUUUAUUUUACAGCUGCAAAGCGAGAAACCCUUACCCAUCAUGGUUUACAUCCAUGGUGGGGCAUUUCUUCGCGGAGAUUCAU .........................(((....)))..(((.(((...((((((((((.......))))))))))((........)))).).))).. ( -25.60) >DroSec_CAF1 45860 96 + 1 AACCCUUAUAUUUAUUUAUUUUGCAGCUGCAAAGCGAGAAACCCUUCCCCAUCAUGGUUUACAUCCAUGGUGGGGCAUUUCUUCGCGGAGAUUCUU ...((..............(((((....)))))((((((((.....(((((((((((.......)))))))))))..)))).))))))........ ( -32.90) >DroSim_CAF1 40100 96 + 1 AACCCUUUUAUUUAUUUAUUUUGCAGCUGCAAAGCGAGAAACCCUUUCCCAUCAUGGUUUACAUCCAUGGUGGGGCAUUUCUUCGCGGAGAUUCUU ...((..............(((((....)))))((((((((.....(((((((((((.......)))))))))))..)))).))))))........ ( -30.40) >consensus AACCCUUUUAUUUAUUUAUUUUGCAGCUGCAAAGCGAGAAACCCUUACCCAUCAUGGUUUACAUCCAUGGUGGGGCAUUUCUUCGCGGAGAUUCUU ...................(((((....)))))((((((((.....(((((((((((.......)))))))))))..)))).)))).......... (-26.68 = -27.23 + 0.56)
| Location | 3,352,517 – 3,352,613 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 95.49 |
| Mean single sequence MFE | -28.43 |
| Consensus MFE | -26.25 |
| Energy contribution | -26.03 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.21 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.978870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3352517 96 - 27905053 AUGAAUCUCCGCGAAGAAAUGCCCCACCAUGGAUGUAAACCAUGAUGGGUAAGGGUUUCUCGCUUUGCAGCUGUAAAAUAAAUAAAUAAAAUGUUU ..........((((.(((((.(((((.(((((.......))))).))))...).)))))))))(((((....)))))................... ( -24.70) >DroSec_CAF1 45860 96 - 1 AAGAAUCUCCGCGAAGAAAUGCCCCACCAUGGAUGUAAACCAUGAUGGGGAAGGGUUUCUCGCUUUGCAGCUGCAAAAUAAAUAAAUAUAAGGGUU .......(((((((.(((((.(((((.(((((.......))))).)))))....)))))))))(((((....)))))..............))).. ( -31.60) >DroSim_CAF1 40100 96 - 1 AAGAAUCUCCGCGAAGAAAUGCCCCACCAUGGAUGUAAACCAUGAUGGGAAAGGGUUUCUCGCUUUGCAGCUGCAAAAUAAAUAAAUAAAAGGGUU .......(((((((.(((((.(((((.(((((.......))))).))))...).)))))))))(((((....)))))..............))).. ( -29.00) >consensus AAGAAUCUCCGCGAAGAAAUGCCCCACCAUGGAUGUAAACCAUGAUGGGAAAGGGUUUCUCGCUUUGCAGCUGCAAAAUAAAUAAAUAAAAGGGUU ..........((((.(((((.(((((.(((((.......))))).))))...).)))))))))(((((....)))))................... (-26.25 = -26.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:03 2006