| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,348,528 – 3,348,625 |
| Length | 97 |
| Max. P | 0.513929 |
| Location | 3,348,528 – 3,348,625 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 87.63 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -14.72 |
| Energy contribution | -15.12 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3348528 97 - 27905053 UAUAAAAUCUCUAAUGACGACUGCACCCUUACACUUGAAAGACGAGUAGCUCGUCAAUAUAGAUAAUGUUAAUUAAACAUUGACUCUA--CUCGUUGUG .............(..((((....................((((((...))))))....(((((((((((.....)))))))..))))--.))))..). ( -18.60) >DroSec_CAF1 41936 99 - 1 UAUAAAAUCUCUAGUGACGACUGCACCCUUAUACUUGAAAGGCGAGUAGGUCGUCAAUAUAGAUAAUGUUAAUUAAACAUUGAAUCUACACUCGUUGCG .........((((.((((((((((.(((((........)))).).))).)))))))...))))(((((((.....)))))))................. ( -23.60) >DroSim_CAF1 36123 99 - 1 UAUAAAAUCUGUAAUGACGACUGCACCCUUAUACUUGAAAGACGAGUAGCUCGUCAAUAUAGAUAAUGUUAAUUAAACAUUGAAUCUACACUCGUUGCG ......(((((((.((((((((((.(.(((........)))..).)))).)))))).)))))))((((((.....)))))).................. ( -21.40) >DroEre_CAF1 34721 95 - 1 UAUAAAUUCUCUAAUGACGACUGCAUCAUUAUAUUCGAUAGACGAGUAGCUCGUCAAUAUAGAUAAUGUUAAUUAAACAUUGAC----UACUCGCUGUG ...........((((((.(....).))))))......((((.(((((((.(((((......)))((((((.....)))))))))----)))))))))). ( -20.60) >DroYak_CAF1 55465 95 - 1 UAUAUAAUCUCUAGUGACGACCGCACCCUUAUAUUAAAAAGACGAGUAGCUCGUCAGUAUAGAUAAUUUUAAUUAAACAUUGAC----CACUCGUUGUG ......((((.((.(((((((..(.(.(((........)))..).)..).)))))).)).))))............(((.(((.----...))).))). ( -14.70) >consensus UAUAAAAUCUCUAAUGACGACUGCACCCUUAUACUUGAAAGACGAGUAGCUCGUCAAUAUAGAUAAUGUUAAUUAAACAUUGACUCUACACUCGUUGUG .......(((.((.((((((((((.....................)))).)))))).)).)))(((((((.....)))))))................. (-14.72 = -15.12 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:01 2006