| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,337,607 – 3,337,706 |
| Length | 99 |
| Max. P | 0.890530 |
| Location | 3,337,607 – 3,337,706 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 77.81 |
| Mean single sequence MFE | -33.22 |
| Consensus MFE | -21.83 |
| Energy contribution | -22.33 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.890530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3337607 99 - 27905053 GCCAGGUCAACAUCGUUCUGAAGCAGGUGCAAGGCAGCGAGGACUGUCUGUACCUCAAUGUCUACACCAGGGAGGUGAGUCA-------A---AGAACCAA-AC-AACAGG .((.(((....)))(((((...(.(((((((.(((((......)))))))))))))..((.((.((((.....)))))).))-------.---)))))...-..-....)) ( -28.20) >DroVir_CAF1 34442 106 - 1 GCCAGGUGAAUCUGGUGCUGAAGCAAGUGCAAGGCAGCGAGGAUUGCCUGUACCUGAAUGUAUAUACCAGAGAGGUGAGUUCUGUAUGGAUA---UACAU--AAUUUAAGC ((((((....))))))(((....((.(((((.(((((......)))))))))).)).((((((((.(((.(.(((.....))).).))))))---)))))--......))) ( -32.80) >DroSec_CAF1 31735 99 - 1 GCCAGGUCAACAUCGUUCUGAAGCAGGUGCAAGGCAGCGAGGACUGCCUGUACCUCAAUGUCUACACCAGGGAGGUGAGUUA-------A---AGAACCAA-AG-AACAGG .((.(((....)))(((((..((((((((((.(((((......)))))))))))).........((((.....)))).))).-------.---)))))...-..-....)) ( -30.60) >DroEre_CAF1 24678 99 - 1 GCCAGGUCAACAUCGUGCUGAAGCAGGUGCAAGGCAGCGAGGACUGCCUGUACCUCAAUGUCUACACCAGGGAGGUGAGUCG-------A---AGAUCUGC-AA-AACGAG ((.(((((.......(((....)))((((((.(((((......)))))))))))....((.((.((((.....)))))).))-------.---.)))))))-..-...... ( -34.10) >DroYak_CAF1 26373 99 - 1 GCCAGGUCAACAUCGUUCUGAAACAGGUGCAGGGCAGCGAGGACUGCCUGUACCUCAAUGUCUACACCAGGGAGGUGAGUCG-------A---AGAUCAGU-AA-AGCGAG ............(((((((((...(((((((((.(((......))))))))))))...((.((.((((.....)))))).))-------.---...)))).-..-))))). ( -32.30) >DroMoj_CAF1 35495 109 - 1 GCCAGGUGAAUCUGGUGCUGAAGCAGGUGCAGGGCAGCGAGGACUGCCUGUACCUGAACGUGUAUACCAGGGAGGUGGGUCU--AAUGAAUAGUUUACUUCAAGGUGAAGC ((((((....))))))(((....((((((((((.(((......)))))))))))))........((((...((((((((.((--(.....)))))))))))..)))).))) ( -41.30) >consensus GCCAGGUCAACAUCGUGCUGAAGCAGGUGCAAGGCAGCGAGGACUGCCUGUACCUCAAUGUCUACACCAGGGAGGUGAGUCA_______A___AGAACAAA_AA_AACAGG ..............(((((.....(((((((.(((((......)))))))))))).........((((.....))))................)))))............. (-21.83 = -22.33 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:54 2006