Locus 110

Sequence ID 3R_DroMel_CAF1
Location 652,511 – 652,612
Length 101
Max. P 0.676706
window182

overview

Window 2

Location 652,511 – 652,612
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 89.33
Mean single sequence MFE -18.90
Consensus MFE -13.21
Energy contribution -13.43
Covariance contribution 0.23
Combinations/Pair 1.14
Mean z-score -2.77
Structure conservation index 0.70
SVM decision value 0.30
SVM RNA-class probability 0.676706
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 652511 101 - 27905053
UCUGCUCUUCAAUGUAUAAGGCUUGGAAAGAAAACCUACUACAAACCUAUUACAAAAAGUGAUAUUAAAACUAAUAAAUAUCAUCUCUCUGUGCACAAACC
..(((.(.....((((..(((.(((...((.....))....))).)))..))))....((((((((..........))))))))......).)))...... ( -13.20)
>DroSec_CAF1 73267 98 - 1
UCUGAUCUUCAAAGUACAAGGUUUGGAAAGUAAGCCUACUACAAACCUAUUACAAAAACUGGUAUUGGAACUAACUAAUA---UCUCUCUGUGCACAAACC
.............((((((((((((...((((....)))).)))))))............((((((((......))))))---))....)))))....... ( -21.90)
>DroSim_CAF1 70324 98 - 1
UCUGAUCUUCAAAGUACAAGGUUUGGAAAGUAAGCCUACUACAAACCUCUUACAAAAACUGGUAUUAGAACUAACUAAUA---UCUCUCUGUGCACAAACC
.............((((((((((((...((((....)))).)))))))............((((((((......))))))---))....)))))....... ( -21.60)
>consensus
UCUGAUCUUCAAAGUACAAGGUUUGGAAAGUAAGCCUACUACAAACCUAUUACAAAAACUGGUAUUAGAACUAACUAAUA___UCUCUCUGUGCACAAACC
.............((((((((((((...((((....)))).)))))))..............((((((......)))))).........)))))....... (-13.21 = -13.43 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:28 2006