Locus 1099

Sequence ID 3R_DroMel_CAF1
Location 3,333,026 – 3,333,122
Length 96
Max. P 0.743009
window1799

overview

Window 9

Location 3,333,026 – 3,333,122
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 84.20
Mean single sequence MFE -24.02
Consensus MFE -19.73
Energy contribution -20.98
Covariance contribution 1.25
Combinations/Pair 1.26
Mean z-score -1.68
Structure conservation index 0.82
SVM decision value 0.45
SVM RNA-class probability 0.743009
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3333026 96 + 27905053
AGCUCGUUUCUUUCGGUGGAAACCAAAUAUGGCUCAUCGUUUUGAAUUGGAAUUUAGGGCAGUGAGCAAAUGUUUUUCCAAAAGCAACAAGUUCUA
((((.(((.((((...((((((...(((((.((((((.(((((((((....))))))))).))))))..))))))))))))))).))).))))... ( -26.10)
>DroSim_CAF1 21030 96 + 1
AGCGUGUUUCUUUUGGUGGGAGUAAAAUAUGGCUCAUCGUUUUGUAUUGGAAUUUAGGGCAGUGAGCAAAUGCUUUUCCAAAAGCAACAAGUUCUA
(((.((((.(((((((.(((((((.......((((((.((((((..........)))))).))))))...)))))))))))))).)))).)))... ( -27.40)
>DroEre_CAF1 20146 94 + 1
AAUGUGUUUCUUUUGGUGGUUUC--UACAUGGCUCAUCAUUUUGCACGGGAAUUUAGGGCAGUGAGUAAAUGUUUUUCCGAAAGCAGCAAGUUCAA
....((((.(((((((.......--.((((.((((((.....(((.(.........).)))))))))..))))....))))))).))))....... ( -19.10)
>DroYak_CAF1 21782 96 + 1
AACGUGUUUCUUUUGCGGGAAACAAUAUAUGGCUCAUCAUUUUAAAUUGGAAUUUACGGCAGUGAGUAAAUGUUUUUCCAAAAGCAACAAGUUCAA
(((.((((.((((((.(..(((((.......((((((..(..(((((....)))))..)..))))))...)))))..))))))).)))).)))... ( -23.50)
>consensus
AACGUGUUUCUUUUGGUGGAAACAAAAUAUGGCUCAUCAUUUUGAAUUGGAAUUUAGGGCAGUGAGCAAAUGUUUUUCCAAAAGCAACAAGUUCAA
(((.((((.(((((((.((((((........((((((.(((((((((....))))))))).))))))....))))))))))))).)))).)))... (-19.73 = -20.98 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:52 2006