Locus 1094

Sequence ID 3R_DroMel_CAF1
Location 3,309,643 – 3,309,763
Length 120
Max. P 0.728477
window1788

overview

Window 8

Location 3,309,643 – 3,309,763
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.14
Mean single sequence MFE -31.25
Consensus MFE -26.00
Energy contribution -27.25
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.83
SVM decision value 0.42
SVM RNA-class probability 0.728477
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3309643 120 + 27905053
UGCAGGUGAAACGCAGUCAACGGCUCCCUCCUUGGUAGCAUUUUUCACGUAAUUUGUGACACUUAAGUGAAUAAUUUAUGCCUGCAACAUAAUUGAGUUGCACCUGCCUCCGUCUUCUAA
.(((((((.(((((((.((...(((.((.....)).))).....(((((.....)))))(((....))).........)).))))..((....)).))).)))))))............. ( -33.00)
>DroSec_CAF1 13835 120 + 1
UGCAGGUGAAACGCAGUCAACGGCUCCCUCCUUGGCAGCAUUUUUCACGUAAUUUGUGACACUUAAGUGAAUAAUUUAUGCCUUCAACAUAAUUGAGUUGCACCUGCCUCCGCCUUCUAA
.(((((((.(((.(((((((.((......))))))).((((...(((((.....)))))(((....)))........))))............)).))).)))))))............. ( -30.30)
>DroSim_CAF1 18085 120 + 1
UGCAGGUGAAACGCAGUCAACGGCUCCCUCCUUGGCAGCAUUUUUCACGUAAUUUGUGACACUUAAGUGAAUAAUUUAUGCCUGCAACAUAAUUGAGUUGCACCUGCCUCCGUCUUCUAA
.(((((((.(((((((.((...(((.((.....)).))).....(((((.....)))))(((....))).........)).))))..((....)).))).)))))))............. ( -33.00)
>DroYak_CAF1 24096 120 + 1
UGCAGGUAAAACGCAGGCAACAGCUCCCUCCUCGGAAACAUUUUUCACGUAAUUUGUGACACUUAAGUGAAUAAUUUAUGCCUGCAAAAUAAUUGAGUUGCACCUGGCUCCGUUUUCUAA
....((.((((((((((((..............(....).....(((((.....)))))(((....))).........))))))).........(((((......))))).))))))).. ( -28.70)
>consensus
UGCAGGUGAAACGCAGUCAACGGCUCCCUCCUUGGCAGCAUUUUUCACGUAAUUUGUGACACUUAAGUGAAUAAUUUAUGCCUGCAACAUAAUUGAGUUGCACCUGCCUCCGUCUUCUAA
.(((((((.(((((((.((...(((.((.....)).))).....(((((.....)))))(((....))).........)).))))..((....)).))).)))))))............. (-26.00 = -27.25 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:41 2006